SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene15096

Length: 1290 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene15096

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ribosomal protein L1p/L10e family protein [Arabidopsis thaliana] emb\|CAB88283.1\| putative protein [Arabidopsis thaliana] gb\|AAL49900.1\| unknown protein [Arabidopsis thaliana] gb\|AEE79812.1\| ribosomal protein L1p/L10e family protein [Arabidopsis thaliana]	-	-	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	76%
Blast2go	protein	-	-	70%

Source	GOs	Term	Type	e value	Identity
Blast2go	nucleolus	GO:0005730	Cellular Component	0.0	70%
Blast2go	membrane	GO:0016020	Cellular Component	0.0	70%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LPJ4

Fln msg: Distance to subject end: 93 aas, your sequence is shorter than subject: 332 - 423

Fln protein: MDKTKNENNKHQVPSRISDETVKRAVDSLLKWVKSRAKHQKPQLLEHDELLHLAITLKRIPDSSRVNSYRIPVPHPLFPLGGSQDICLIIDDRVKGLNAEIANNKVKEEGLPISKVLKYSKLKTDYKPFEAKRKLCDSFDLFLVDKSVVPLLPRLLGKSFFKKKKYPIPVDLTHRQWKGEIESACSSVFLYVGKGTCCDVKVARVSQTRDEIVENFVAVINGLASVIPRKWKNIRSLHMKSLESVALPLYQSITETPLKIEDVKTESQIDKPEKKEVHDRDVERKKFRKGMISDVRYMDHMLGDFSDGLFGGKNGNQADLLDSLGFRTGDVD

Protein Length: 333

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTTTCTATCCATGAAACGGAGAACTTCATCATTACGAATGTCGACCTTTGCAATGCATGGGAGTTCAAATATACGAAAATTCTAAGCCTCAAACAACGCTCTGATCAACCAGAATCCCTTCTTTAGGGTTTACGAAGTGTTTAGGTTTTTAAAGGGTTTAACACAACACTGTTGCGGTGTCGCATATAGGATTCGCATCCGACGAAAGTTGTTGGTAAGTTTTGGATTTCAGGCTTCCTGCATTTTAATTTTCCTGCTTCAGCTTCC_-_ATGGACAAAACAAAGAACGAAAACAATAAACACCAAGTCCCATCGAGAATAAGCGATGAAACAGTAAAGAGAGCAGTGGACTCGCTCTTGAAATGGGTAAAGTCGAGGGCAAAACATCAGAAACCCCAACTTCTGGAACATGACGAGCTTCTGCACTTGGCCATTACACTGAAAAGGATCCCGGATAGTTCAAGAGTCAATTCTTACAGGATACCAGTACCTCATCCCCTATTTCCTTTGGGTGGAAGCCAAGATATCTGTTTGATTATTGATGATAGAGTAAAGGGTTTAAATGCGGAGATAGCCAACAACAAGGTTAAGGAGGAGGGTTTACCCATTTCAAAGGTTTTGAAATATTCAAAGCTCAAGACTGATTATAAGCCATTTGAGGCCAAGAGAAAGCTTTGTGACTCTTTTGATCTGTTCTTGGTCGATAAATCCGTGGTTCCCCTGCTCCCCAGGTTGTTGGGGAAATCTTTCTTTAAGAAGAAAAAGTATCCCATCCCTGTGGATTTGACCCACAGGCAATGGAAGGGAGAGATCGAGTCAGCTTGCAGTTCGGTCTTTCTCTACGTTGGGAAGGGTACCTGTTGTGATGTTAAAGTGGCTAGGGTTTCGCAGACAAGGGACGAAATTGTGGAGAATTTCGTTGCTGTGATCAATGGTCTTGCATCGGTTATCCCGAGAAAGTGGAAGAACATCCGGTCTTTGCATATGAAATCCTTGGAGTCTGTGGCACTTCCACTCTACCAATCCATTACTGAAACGCCCCTTAAGATTGAAGATGTCAAAACAGAATCACAAATCGATAAACCAGAGAAGAAAGAAGTACATGATCGAGATGTTGAGAGAAAGAAATTCAGGAAGGGAATGATTTCCGATGTTCGGTATATGGATCACATGTTGGGAGATTTTTCTGATGGGCTTTTCGGTGGGAAAAACGGGAATCAAGCTGATCTTCTGGACTCCCTAGGATTCAGAACAGGGGATGTTGATCC

Fln Alignment:

Contig15096___MDKTKNENNKHQVPSRISDETVKRAVDSLLKWVKSRAKHQKPQLLEHDELLHLAITLKRIPDSSRVNSYRIPVPHPLFPLGGSQDICLIIDDRVKGLNAEIANNKVKEEGLPISKVLKYSKLKTDYKPFEAKRKLCDSFDLFLVDKSVVPLLPRLLGKSFFKKKKYPIPVDLTHRQWKGEIESACSSVFLYVGKGTCCDVKVARVSQTRDEIVENFVAVINGLASVIPRKWKNIRSLHMKSLESVALPLYQSITETPLKIEDVKTESQIDKPEKKEVHDRDVERKKFRKGMISDVRYMDHMLGDFSDGLFGGKNGNQADLLDSLGFRTGDVD
B8LPJ4_______________MDNTKKKNNKPQVPSRLSHERVEKGVDALLTWVKSKAKHQKPQLLEHDELLYMVVTLKRIPDRERINPYKIRLPHPLFPLDGSQEVCLIIDDREKGLNAEVAKNKVKEEGLPISKVLKYSKLKTDYKPFEAKRKLCGSFDLFLADKSVVPLLPKLLGKAFFKKKKHPIPVDLTHKQWRGQIESACSSAFLYVGKGTCCVIKVARVSQTRNEIVENVVAVIDGLASVIPRNWNNIRSLHLKSLESLALPLYQSIPEIPLRIEGVKTEPEADVPEKKEVCDKHVDKKTFKKGRIRDVRYMDNMLGDFSDGILGGEDGNEVDF---LGGRVKDVD

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
468			66	33	0.997452
652	60		40		1.0
911			75	25	1.0
918	90	10			0.90298
920			90	10	0.90298
921		10	90		0.90298
922	90		10		0.90298
923		90		10	0.90298
926	90	10			0.90298
927	90	10			0.90298
933		10	90		0.90298
1125		85		14	0.999981
1150	63	36			1.0
1244	75	25			0.996473
1245	25		75		0.996473
1246		75		25	0.996473
1266	33		66		0.997452
1267		33	66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain