SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene14914

Length: 1269 nt

Origin of reads: Inia v1 Biogeco3 v1

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene14914

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	RecName: Full=Putative potassium transporter 12; AltName: Full=OsHAK12 emb\|CAD21002.1\| putative potasium transporter [Oryza sativa Japonica Group] gb\|EAZ41864.1\| hypothetical protein OsJ_26409 [Oryza sativa Japonica Group]	-	-	64%
FL-Next	sp=Acyl carrier protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	potassium transporter	-	-	79%

Source	GOs	Term	Type	e value	Identity
Blast2go	pollen development	GO:0009555	Biological Process	0.0	79%
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	79%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Multicopper oxidase, copper-binding site	IPR002355	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Acyl carrier protein (ACP)	IPR003231	-	-
Sma3	K+ potassium transporter	IPR003855	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Phosphopantetheine-binding	IPR006163	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	Acyl carrier protein-like	IPR009081	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3		IPR018519	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NK69

Fln msg: Unexpected STOP codon in 5 prime region,

Fln protein: PQRHISEEASCRAAAPSWNQKEVAPRFSGLKAVSFRQQIFSFPSFQSSKCASRALQVVCAAKPETLSKVCDIVKSQLALTDDKPLTPESKFSDLGADSLDTVEIVMALEEEFKISVEEENAGNITTVQEAADLIERLSSSS*

Protein Length: 143

Fln nts: GAAAGGCTTCTTGGACATCGCTTTGATGATGTATAAGATATGCAGCCTGTCCCATATATTGCAATAGTAGGCACGGAAACACAACTGCTGTAAATGCAATCTGAACAGCTAAGATTGGAAAATGGCCCAAATCAGCAAAGAATGCTTCTGTACCTGTTATACAAAGCATAATCCCTCCTAGAGAAACCCAGCTACGTTTCTTTCCTCTTCTGAAATACCGCACTATATAAACTGGAGAGAAAGCTTTCAAGACTTGTGCGTCATGTTTACATATATTGTAAGCCCCGATACTTCCAATGCATAGGAACCAAAGCAGAACTGCTGGTGCAAATAACCATCCAACTTTGTCTGTGCCATAATGCTGCACGCTAAATAGAATAACCAGGACGACCACTGCAAGAGCCACAACTGTAGCAGTGCTCATTCCAGGATGATCTACCTTGATACCACCAACAGAGGAAAGGACAGAAAATAGCCGGAGTAAAAATTCCATCACCAATGACCATGCAAGTGCCTATCAGTACAAGTAGAAGAAGTGCATTTTTCCGGTAGACCTTTGCTTCTAACCATTTCTTTGTTCTTGCTGCAAATGACTTATCTTTAATTGTTTGTCTGCTATAAGTTGTGAGTTCTTCATCCGTGCGGTGTTGATTCGGAATAGTATTCACTTTAACATGCCGACAGAGTAATGAATACAAAGCAAATGTTCCACCTTCTCCATTGTCATTGGCCCTC_-_ATGACCACAAAGACATATTTCAGAAGAGGCCTCGTGCCGCGCAGCAGCGCCATCATGGAACCAAAAAGAGGTTGCCCCCAGATTCTCTGGACTCAAGGCAGTATCATTTAGACAGCAAATATTTTCCTTTCCATCATTTCAATCTTCAAAATGCGCTTCTCGTGCTCTGCAAGTAGTTTGTGCGGCCAAGCCAGAGACTCTGAGCAAAGTATGCGATATCGTGAAGAGTCAGTTGGCATTAACAGATGATAAACCTTTGACTCCCGAGTCCAAATTTTCTGATCTGGGTGCCGACTCTCTTGATACGGTAGAGATAGTAATGGCTCTTGAGGAGGAATTCAAAATCAGTGTTGAAGAAGAAAATGCTGGGAACATTACAACTGTGCAGGAAGCAGCTGATTTGATAGAAAGGCTCTCCTCTTCATCTTAGGTTGTGAAGTCTTGAATGGTGCATGCATGTTCCTTAAATGATGTCCAAGTGCACAACTGTTTATCATCGTGGCTGTTTTGTGGATCTGGTGTGCAATGAGTTGA

Fln Alignment:

Contig14914___AAAPSWNQKEVAPRFSGLKAVXXXXXXXXXXXXXXXKCASRALQVVCAAKPETLSKVCDIVKSQLALTDDKPLTPESKFSDLGADSLDTVEIVMALEEEFKISVEEENAGNITTVQEAADLIERL
A9NK69_______________AAAPSWNQKQVVPRFSGLKAVSFGQQRFDFPSFQSSQCTSGALKVVCAAKPETLSKVCDIVKSQLALSDDKPLTPESKFSDLGADSLDTVEIVMALEEEFKISVEEENAGNITTVQEAADLIERL

SNPs (tot: 36)

Position	A %	C %	G %	T %	Probability
370	14		85		0.993533
446		12	87		0.992554
449	87			12	0.992554
452	85			14	0.993533
453		85	14		0.993533
454	14	85			0.993533
455	85		14		0.993533
456	85			14	0.993533
457		85	14		0.993533
459		14	85		0.993533
462		14	85		0.993533
463	85	14			0.993533
468	83			16	0.994512
470	33			16	1.0
471		16	16	66	0.988813
472	16		66	16	0.988813
473	80		20		0.995493
475	20		80		0.995493
497	25		25		0.995533
500	75		25		0.996473
501		75		25	0.996473
582		50		50	1.0
583	50		50		1.0
627	66		33		1.0
645		28		71	1.0
660		77		22	0.999999
669	22		77		0.999999
674		77		22	0.999999
679	77		22		0.999999
704	18		81		0.999994
705	81		18		0.999994
726	10		90		0.90298
777	11		88		0.923564
790		11	88		0.923564
866		12		87	0.992554
899		12		87	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain