SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene14819

Length: 976 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene14819

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	DUF946 domain containing protein	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Ricinus communis (Castor bean).	-	-	57%
Blast2go	uncharacterized protein	-	-	79%

Source	InterPros	Term	Type	Identity
Sma3	RNA-processing protein, HAT helix	IPR003107	-	-
Sma3	Acyl-CoA dehydrogenase, conserved site	IPR006089	-	-
Sma3	Vacuolar protein sorting-associated protein 62	IPR009291	-	-
Sma3	Protein of unknown function DUF966	IPR010369	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Carbohydrate kinase, FGGY, conserved site	IPR018483	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: B9S7N0

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 268 - 569

Fln protein: MSTNYN*WLKFTSRWLQ**RILA*LP*RGWGCKRLRQGDLQSTIAYVHFKPALGGTYTDVAIWLFYPLNGPITVKVGALNMPLKYGEHIGDWEHFTLRVSNFTGELWKVYFSQHSGGQWVNASDLEHIEGNRIAVYAAKSGHATFPHAGNFLEGDRKLGVGIRNDASRSKYFLDTSRKYQIVAAEHLEALGSRDIVVEPPWLQYMREWGPKIVYNSRTELNRVIRLLPSKLRSPIESLLNNLPNELSGEQGPTGPKAKDNWYGDERV*

Protein Length: 269

Fln nts: AATGTCAACAAATTACAATTAATGGCTCAAATTTACCTCAAGGTGGCTCCAATGATAAAGAATACTGGCTTGACTTCCCTAAAGAGGATGGGGTTGTAAAAGACTGAGACAAGGTGATTTGCAGAGCACAATAGCATATGTACATTTTAAACCGGCTTTGGGAGGAACATACACTGATGTTGCAATATGGCTGTTTTATCCTCTGAATGGTCCCATCACTGTCAAGGTTGGTGCCCTTAATATGCCTCTCAAATATGGAGAGCATATTGGTGATTGGGAACATTTCACTCTTAGAGTGAGCAATTTCACTGGTGAACTATGGAAAGTTTATTTCTCACAGCACAGCGGTGGTCAATGGGTTAATGCATCAGATTTGGAACACATTGAAGGGAATAGGATAGCAGTATATGCAGCAAAGAGTGGGCATGCAACATTTCCTCATGCAGGGAACTTTCTCGAGGGTGACAGGAAGCTTGGTGTTGGTATCCGGAATGATGCCAGCCGAAGCAAATATTTTCTGGACACTAGCAGAAAATACCAAATTGTTGCAGCAGAGCACTTGGAAGCTCTTGGGTCAAGGGACATAGTAGTAGAGCCTCCATGGTTGCAGTACATGAGGGAGTGGGGACCAAAAATTGTCTATAATTCACGAACAGAGCTTAATAGGGTAATCAGATTACTTCCTTCTAAACTGAGGTCACCTATAGAGAGTCTCTTAAACAATCTGCCTAATGAGCTTTCAGGTGAGCAAGGACCCACAGGACCCAAAGCCAAGGACAATTGGTATGGGGATGAAAGAGTCTGA___TGTGCCATTTTCACTACTAGTAAAATGTAAGTTCAGTTTGTCAATCATAATGATCAGAGTCTCTTCCACTTGGTTGTGAATTCAATCCATTCTGTACTGCAAGCTGTAACAATAAACTTTTGAATTGAGCATATTATTTGTCTGCCAATAGCTGCAATATATTTTGCTTTC

Fln Alignment:

Contig14819___LP*RGWGCKRLRQGDLQSTIAYVHFKPALGGTYTDVAIWLFYPLNGPITVKVGALNMPL-KYGEHIGDWEHFTLRVSNFTGELWKVYFSQHSGGQWVNASDLEHIEGNRIAVYAAKSGHATFPHAGNFLEGDRKLGVGIRNDASRSKYFLDTSRKYQIVAAEHLEALGSRDIVVEPPWLQYMREWGPKIVYNSRTELNRVIRLLPSKLRXXXXXXXXXXXXXXXGEQGPTGPKAKDNWYGDE
B9S7N0_______________LPSKDEARENIKRGDLESAELYVNVKPAIGGTFTDIAMWIFCPFNGPATLKVGLMSIPMTKIGQHVGDWEHYTLRISNFTGELWQAFFSEHSGGRWVDASDLEFIEDNKIIVYSSKHGHASFPHPGTYLQGSTKLGIGVRNDVARSKYYIDSSTKYQLIAAEYL----GDGVVKEPCWLQYMREWGPTIVYDSRSEADKIINLLPFFVRFSVDVLFDLFPTELYGEEGPTGPKEKDNWLGDE

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
457		40		60	1.0
514	25			75	0.996473
515		25		75	0.996473
872	33			66	0.997452
873	33	66			0.997452
875			33	66	0.997452
876		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain