SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene14779

Length: 1504 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene14779

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	phospholipid-translocating ATPase [Arabidopsis thaliana] sp\|Q9LNQ4.2\|ALA4_ARATH RecName: Full=Putative phospholipid-transporting ATPase 4; Short=AtALA4; AltName: Full=Aminophospholipid flippase 4 gb\|AEE29599.1\| phospholipid-translocating ATPase [Arabidops	-	-	48%
FL-Next	sp=Putative phospholipid-transporting ATPase 4; Arabidopsis thaliana (Mouse-ear cress).	-	-	48%
Blast2go	phospholipid-transporting atpase 9-like	-	-	66%

Source	GOs	Term	Type	e value	Identity
Blast2go	catalytic activity	GO:0003824	Molecular Function	0.0	66%

Source	InterPros	Term	Type	Identity
Sma3	ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter	IPR001757	-	-
Sma3	Haloacid dehalogenase-like hydrolase	IPR005834	-	-
Sma3	ATPase, P-type, phospholipid-translocating, flippase	IPR006539	-	-
Sma3	ATPase, P-type, ATPase-associated domain	IPR008250	-	-
Sma3	HAD superfamily hydrolase-like, type 3	IPR013200	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Somatotropin hormone, conserved site	IPR018116	-	-
Sma3	ATPase, P-type phosphorylation site	IPR018303	-	-
Sma3	Formate C-acetyltransferase glycine radical, conserved site	IPR019777	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q9LNQ4

Fln msg: your sequence is shorter than subject: 460 - 1216

Fln protein: KICLAIGDGANDVGMIQKANIGVGISGVEGQQASMAADFSIAQFRFLEQLLLVHGGWCYNRISFMVKYFFYKNFVFGFSIFFCNALTMFSGQSAFQDWFLSLYNVLFTALPVGVVAVLDQDVKSIYRLRYPALYMQGQRNQCFTAWKVTLWLVNGIIQALLCVSVVFLAYSKYSDRENGQMVGIYTVGTTMFTSIVLIVNLQMAITIQYWTWIHHVAIWGECFIWFMFLLLSGELPHGRMIELHKLFISVLAPTYSFYIIVIMGTVIALLPSFAVMSVFRNFFPEDYQIIQEIERNDQRNVSTCTKKTSSELGLELTQPRINGSAASLGFKHAHSSGLFDSRHAIESEVESSREFDSKEPTDTRQLYGSYKSRPTPIEDIQIRHGIFDSRHAIESEVESSREFDSKDLTDTRQLYGSHKSRSTPIENIQRRHGDSLSVASFRMIKIRASSLYRRIFFSR*

Protein Length: 461

Fln nts: ATAAAATTTGTTTAGCTATTGGTGATGGTGCGAATGATGTTGGTATGATTCAGAAAGCAAATATTGGTGTTGGCATTAGTGGTGTTGAAGGGCAACAGGCATCTATGGCAGCAGATTTTTCAATAGCACAGTTTCGCTTTCTTGAACAACTTCTTTTGGTTCATGGTGGATGGTGCTATAATCGGATCTCATTCATGGTGAAGTACTTTTTCTACAAGAACTTTGTCTTTGGGTTTTCCATTTTCTTCTGCAATGCATTGACCATGTTCTCGGGACAGTCAGCATTTCAAGATTGGTTTTTATCATTGTACAATGTACTATTTACAGCATTACCTGTTGGTGTGGTAGCCGTTCTTGACCAAGATGTGAAATCAATTTATCGGTTGAGGTATCCAGCTCTCTACATGCAGGGCCAAAGAAATCAATGCTTCACAGCATGGAAAGTAACTCTGTGGCTAGTAAATGGCATTATTCAGGCGCTTCTTTGTGTTTCTGTCGTTTTCCTCGCCTACTCTAAGTACTCTGACAGGGAAAATGGACAAATGGTGGGCATATACACAGTTGGAACAACAATGTTCACAAGCATTGTACTAATTGTGAACCTTCAGATGGCGATCACAATCCAGTATTGGACATGGATTCACCATGTGGCTATTTGGGGAGAATGTTTCATCTGGTTCATGTTTTTGCTACTGTCGGGGGAACTACCACACGGAAGGATGATTGAGCTGCACAAACTTTTTATTTCAGTCCTAGCACCAACTTATAGTTTCTACATTATTGTTATCATGGGAACAGTAATTGCATTGCTCCCTAGTTTCGCAGTTATGTCTGTTTTTAGAAATTTCTTTCCGGAGGATTATCAAATTATACAAGAGATCGAAAGAAATGATCAGAGAAATGTTTCAACTTGCACTAAGAAAACTTCTTCTGAACTAGGATTGGAACTTACACAACCCAGAATAAATGGAAGTGCAGCTTCACTTGGTTTCAAACATGCCCACTCAAGTGGATTATTTGATTCGAGACATGCCATTGAATCGGAAGTGGAATCTTCAAGAGAATTTGATTCAAAAGAACCTACAGATACCCGACAGTTGTATGGTAGCTATAAGAGTAGACCCACGCCTATAGAGGACATACAAATAAGACACGGAATATTTGACTCGAGACACGCCATTGAATCGGAAGTGGAATCTTCAAGAGAGTTTGATTCGAAGGATCTCACAGATACCCGACAGTTGTATGGTAGCCATAAGAGTAGATCCACGCCTATAGAGAACATACAAAGAAGACATGGTGATTCGTTAAGTGTAGCTTCATTTAGAATGATTAAAATTCGAGCTTCAAGCTTGTATAGAAGAATTTTTTTTTCAAGATGA___TATCGGAGAATAAAACTGCCTTAGATGTATTATGGAAGTTATTAAGCAATGACCACCTGGTTTTCTTCCTGCTCGTCTTACGAGGCAGCATTTTATATATCATTTGCAAGGTCACAATTTTC

Fln Alignment:

Contig14779___KICLAIGDGANDVGMIQKANIGVGISGVEGQQASMAADFSIAQFRFLEQLLLVHGGWCYNRISFMVKYFFYKNFVFGFSIFFCNALTMFSGQSAFQDWFLSLYNVLFTALPVGVVAVLDQDVKSIYRLRYPALYMQGQRNQCFTAWKVTLWLVNGIIQALLCVSVVFLAYSKYSDRENGQMVGIYTVGTTMFTSIVLIVNLQMAITIQYWTWIHHVAIWGECFIWFMFLLLSGELPHGRMIELHKLFISVLAPTYSFYIIVIMGTVIALLPSFAVMSVFRNFFPEDYQIIQEIE
Q9LNQ4_______________KITLAIGDGANDVGMIQEADIGVGISGVEGMQAVMASDFSIAQFRFLERLLVVHGHWCYKRIAQMICYFFYKNIAFGLTLFYFEAFTGFSGQSVYNDYYLLLFNVVLTSLPVIALGVFEQDVSSEICLQFPALYQQGKKNLFFDWYRILGWMGNGVYSSLVIFFLNIGIIYEQAFRVSGQTADMDAVGTTMFTCIIWAVNVQIALTVSHFTWIQHVLIWGSIGLWYLFVALYGMMPPSLSGNIYRILVEILAPAPIYWIATFLVTVTTVLPYFAHISFQRFLHPLDHHIIQEIK

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
1238	20		80		0.995493
1276	80		20		0.995493
1349		80		20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain