SustainPineDB

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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene14533

Length: 464 nt

Origin of reads: Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene14533
CACGAGAAAGAGGGCTAGATTCATCCGGTGGAAGTGCTGGCCGGACTTTCGATCTCAGGGCAATTGCTGAAGGTTCAAATGGACAACTGGTGACCAGTGCAAATAGGGCATGTCGTGTTACTGTCAAAATAATTCAAGCAACAGATCTGAAGAAACAGCCGCTGGCACCAAGATGCAATTGGTCCATCATTTACAGTGAGAGTGGAAGATACTACGCACAAATCAAGAGAGATTAAGGATTCAGTTGATGAGGATGGGGCATTAAGAGTGGTCCAGACTTTCACTTTTGATGTCAAAGATCCAGAGAGTGCCCAGTTAATAGTACAAGTTTATGGCAAGGGCTTGCTTGGATATGACAAGCTTATTGGAACATGCCAACACATGCCTGTAAAGCTGTTTCTAGAGGAAAATGATGGCTTTAGTGAAGCGGAAGGCAAGTGGTATGATCTTTACACAAAAGATGG

Ace file of the UniGene sp_v2.0_unigene14533 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	C2 domain containing protein	-	-	1.0e-05	42%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	54%
Blast2go	unknown [Picea sitchensis]	-	-	1.71073e-27	63%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLZ8

Fln msg: Separated hits, possible frame ERROR between 155 and 184, Distance to subject end: 407 aas, atg_distance in limit (1-15): atg_distance = 11, W2: There is no M at the beginning, your sequence is shorter than subject: 154 - 571

Fln protein: RERGLDSSGGSAGRTFDLRAIAEGSNGQLVTSANRACRVTVKIIQATDLKxxxxxxxxxxxPSFTVRVEDTTHKSREIKDSVDEDGALRVVQTFTFDVKDPESAQLIVQVYGKGLLGYDKLIGTCQHMPVKLFLEENDGFSEAEGKWYDLYTKD

Protein Length: 155

Fln nts: CACGAGAAAGAGGGCTAGATTCATCCGGTGGAAGTGCTGGCCGGACTTTCGATCTCAGGGCAATTGCTGAAGGTTCAAATGGACAACTGGTGACCAGTGCAAATAGGGCATGTCGTGTTACTGTCAAAATAATTCAAGCAACAGATCTGAAGAAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTCCATCATTTACAGTGAGAGTGGAAGATACTACGCACAAATCAAGAGAGATTAAGGATTCAGTTGATGAGGATGGGGCATTAAGAGTGGTCCAGACTTTCACTTTTGATGTCAAAGATCCAGAGAGTGCCCAGTTAATAGTACAAGTTTATGGCAAGGGCTTGCTTGGATATGACAAGCTTATTGGAACATGCCAACACATGCCTGTAAAGCTGTTTCTAGAGGAAAATGATGGCTTTAGTGAAGCGGAAGGCAAGTGGTATGATCTTTACACAAAAGATGG

Fln Alignment:

Contig14533___SGGSAGRTFDLRAIAEGSNGQLVTSANRACRVTVKIIQATDLKKxxxxxxxxxxPSFTVRVEDTTHKSREIKDSVDEDGALRVVQTFTFDVKDPESAQLIVQVYGKGLLGYDKLIGTCQHMPVKLFLEENDGFSEAEGKWYDLYTKD
B8LLZ8_______________TGESSAPSFDLGAIAAGSNGTQVTCSNSSYRLTAKIIGIKDLKKxxxxxxxxxxPSLKLKVEGISRRSLEITNIMDQDGVLKVNQNFTFEVRDPQSAEISIKVHGKGLFGLEDFIGACENMHVKDLLEQGTGEVELEPKWYDLYSKD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain