SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene14450

Length: 1596 nt

Origin of reads: Biogeco2 v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene14450

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	YUCCA family monooxygenase [Arabidopsis thaliana] sp\|O23024.1\|YUC3_ARATH RecName: Full=Flavin-containing monooxygenase YUCCA3 gb\|AAB80641.1\| Contains similarity to human dimethylaniline monooxygenase (gb\|M64082) [Arabidopsis thaliana] gb\|AAL23752.1\| flavi	-	-	59%
FL-Next	sp=Flavin-containing monooxygenase YUCCA3; Arabidopsis thaliana (Mouse-ear cress).	-	-	59%
Blast2go	flavine-containing monoxygenase	-	-	77%

Source	ECs	Term	Type	e value	Identity
Blast2go	Flavin-containing monooxygenase.	EC:1.14.13.8	-	0.0	77%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Methane metabolism	00680		0.0	77%
Blast2go	Drug metabolism - cytochrome P450	00982		0.0	77%

Source	GOs	Term	Type	Identity
Blast2go	auxin biosynthetic process	GO:0009851	Biological Process	77%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	77%
Blast2go	N,N-dimethylaniline monooxygenase activity	GO:0004499	Molecular Function	77%
Blast2go	flavin adenine dinucleotide binding	GO:0050660	Molecular Function	77%
Blast2go	NADP binding	GO:0050661	Molecular Function	77%

Source	InterPros	Term	Type	Identity
Sma3	Pyridine nucleotide-disulphide oxidoreductase, class-II	IPR000103	-	-
Sma3	CUB	IPR000859	-	-
Sma3	Flavin monooxygenase FMO	IPR000960	-	-
Sma3	Pyridine nucleotide-disulphide oxidoreductase, NAD-binding domain	IPR001327	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3	Monooxygenase, FAD-binding	IPR002938	-	-
Sma3	2-oxo acid dehydrogenase, lipoyl-binding site	IPR003016	-	-
Sma3	Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal	IPR003953	-	-
Sma3	FAD-dependent pyridine nucleotide-disulphide oxidoreductase	IPR013027	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	Beta-ketoacyl synthase, active site	IPR018201	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: O23024

Fln msg: your sequence is shorter than subject: 410 - 437

Fln protein: KEAHDGLLEKQRCVWVNGPIIVGAGPSGLATAACLREQGVSCVILEKADCLVSLWQQRTYNRLKLHLPKQFCELPLMPFPDRFPTYPTKEQFIEYIESYAKEFKLQPRFNQRVGSASYDRTCGHWRVRTVNTAACDNMNKNTDYISRWLVVASGENAEPIIPDIAGVQSFRGSVIHASRYRTGADYEGKKVLVVGCGNSGMELCLDLFNHNAKPFMVVRNTVHVLPREMFGRSTFGVAMALMKRLPLWMVDRFLLSVAYFKFGNTECYGLKRPALGPMELKDKTGKTPVLDVGTLAQIKNGNIKVLPAISCLTPCGAKFLDGQKLEFDSVILCTGYRSNVPNWLKDSDFFSDDGMPKTPFPDGWKGENGLYSVGFTRRGLLGASLDARRIAQDIGGLLRAGRKQQFVLA*

Protein Length: 411

Fln nts: CAAGGAAGCCCATGATGGTTTGTTAGAGAAACAGCGGTGCGTTTGGGTGAATGGCCCTATAATTGTAGGGGCAGGCCCCTCGGGGCTTGCCACGGCGGCCTGCCTCAGAGAACAGGGCGTTTCCTGTGTTATTCTGGAGAAAGCAGACTGCCTTGTTTCCCTTTGGCAACAGAGAACCTATAACCGTTTGAAGCTTCACTTGCCCAAACAGTTCTGCGAGCTGCCTTTAATGCCGTTTCCCGACCGGTTCCCCACGTATCCCACCAAGGAGCAGTTTATCGAATACATTGAATCCTATGCAAAGGAGTTCAAGCTTCAGCCCAGATTCAATCAACGTGTAGGGTCCGCTTCTTATGATCGAACATGCGGGCACTGGAGAGTTCGCACTGTGAACACTGCTGCATGTGATAACATGAACAAGAATACTGATTACATTAGCCGATGGCTCGTGGTTGCCAGCGGGGAAAATGCAGAGCCCATCATTCCTGATATTGCGGGCGTGCAGAGTTTCAGGGGGAGTGTCATTCATGCTAGCCGGTATAGAACGGGAGCGGATTATGAAGGGAAGAAGGTTCTCGTCGTCGGTTGTGGGAATTCTGGCATGGAACTCTGCCTCGACCTCTTCAATCACAATGCAAAGCCATTCATGGTTGTTAGGAATACTGTGCATGTGTTACCCAGAGAAATGTTTGGGAGGTCGACATTTGGTGTAGCCATGGCATTGATGAAAAGGCTACCGCTGTGGATGGTCGATCGGTTCCTCCTGTCTGTGGCTTATTTCAAGTTCGGCAATACGGAATGCTATGGTCTGAAGCGCCCAGCGCTTGGTCCTATGGAACTCAAGGACAAAACGGGGAAAACACCCGTATTGGACGTGGGAACACTGGCACAAATCAAGAACGGAAACATCAAGGTTCTGCCTGCGATAAGCTGCCTCACGCCATGTGGTGCTAAATTTCTAGACGGACAAAAGTTAGAGTTTGACTCTGTGATTCTGTGCACCGGGTACAGAAGCAATGTGCCCAACTGGCTCAAGGATTCCGATTTCTTTTCAGACGATGGAATGCCTAAGACGCCGTTTCCCGACGGTTGGAAGGGCGAAAACGGGCTGTATTCGGTAGGATTCACCAGGCGAGGGTTGCTAGGAGCATCACTAGACGCACGGCGCATTGCTCAAGACATAGGCGGGCTGCTAAGGGCAGGAAGGAAACAGCAGTTTGTATTGGCATAA___ATCTTTTTGCCCGCCCGGGCCGGACACGAAACACCCACTGCCTGAATTTTTGGTTTCATTTTGGTAATATGTATGTGACAGTGTCCATTTTCTGCGAGACACTTTTTACACAGCAGGGGATTTCCAGGTCGATGTACCGACTGTTTGCGATGGAAAAAATCTTGCTCAGGAGAATTAATTTTCTTTAAGTACAAACTTGTATCGTGGTATTGAAAGAAACCTGAAAGAGCCAAACACTCTAATGGCGCAGAACTGAGATTATCCCGTGCGCTCCGTGTACATTACCCATTTTCGCATCGGATATTCCTCTGAACAAAAGTTGCGATCTATGTATAGAGCCGATCGAGCCATAAAAGAACAAAACG

Fln Alignment:

Contig14450___QRCVWVNGPIIVGAGPSGLATAACLREQGVSCVILEKADCLVSLWQQRTYNRLKLHLPKQFCELPLMPFPDRFPTYPTKEQFIEYIESYAKEFKLQPRFNQRVGSASYDRTCGHWRVRTVNT----AACDNMNKNTDYISRWLVVASGENAEPIIPDIAGVQSFRGSVIHASRYRTGADYEGKKVLVVGCGNSGMELCLDLFNHNAKPFMVVRNTVHVLPREMFGRSTFGVAMALMKRLPLWMVDRFLLSVAYFKFGNTECYGLKRPALGPMELKDKTGKTPVLDVGTLAQIKNGNIKVLPAISCLTPCGAKFLDGQKLEFDSVILCTGYRSNVPNWLKDSDFFSDDGMPKTPFPDGWKGENGLYSVGFTRRGLLGASLDARRIAQDIGGLLRAGRKQQ
O23024_______________RRCIWVNGPVIVGAGPSGLAVAAGLKREGVPFIILERANCIASLWQNRTYDRLKLHLPKQFCQLPNYPFPDEFPEYPTKFQFIQYLESYAANFDINPKFNETVQSAKYDETFGLWRVKTISNMGQLGSCE-----FEYICRWIVVATGENAEKVVPDFEGLEDFGGDVLHAGDYKSGGRYQGKKVLVVGCGNSGMEVSLDLYNHGANPSMVVRSAVHVLPREIFGKSTFELGVTMMKYMPVWLADKTILFLARIILGNTDKYGLKRPKIGPLELKNKEGKTPVLDIGALPKIRSGKIKIVPGIIKFGKGKVELIDGRVLEIDSVILATGYRSNVPSWLKDNDFFSDDGIPKNPFPNGWKGEAGLYAVGFTRKGLFGASLDAMSVAHDIANRWKEESKQQ

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
1109	66			33	0.997452
1110	33	33		33	0.997753
1111	66		33		0.997452
1112		66	33		0.997452
1114			66	33	0.997452
1115		33	66		0.997452
1116	33	66			0.997452
1232		33		66	0.997452
1234			66	33	0.997452
1236	66		33		0.997452
1238	66		33		0.997452
1240	66	33			0.997452
1245			33	66	0.997452
1246			33	66	0.997452
1250		66		33	0.997452
1252	33	66			0.997452
1255		66		33	0.997452
1257	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain