SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene14439

Length: 876 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene14439 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Histone H2B n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7MWT0_ARALL	-	-	1.99993e-41	94%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	100%
Blast2go	histone h2b	-	-	0.0	99%

Source	GOs	Term	Type	Identity
Blast2go	nucleosome assembly	GO:0006334	Biological Process	99%
Blast2go	DNA binding	GO:0003677	Molecular Function	99%
Blast2go	nucleolus	GO:0005730	Cellular Component	99%
Blast2go	nucleosome	GO:0000786	Cellular Component	99%

Source	InterPros	Term	Type	Identity
Sma3	Histone-fold	IPR009072	-	-
Sma3	Histone core	IPR007125	-	-
Sma3	Histone H2B	IPR000558	-	-

Full-Lengther Next Prediction

SNPs (tot: 31)

Position	A %	C %	G %	T %	Probability
84		66		33	0.997452
104		33	66		0.997452
225	66			33	0.997452
247		33		66	0.997452
249		33		66	0.997452
305			66	33	1.0
374			8	91	0.999807
666			15	84	0.999986
668		90	10		0.90298
675	10			90	0.90298
676	10			90	0.90298
677		70	10	20	0.999998
678			33	66	1.0
679	22			77	0.999999
680		77	22		0.999999
681	11			88	0.923564
682		77	22		0.999999
683	22		11	66	0.999999
684	12	87			0.992554
685	25	75			1.0
689	16	66	16		0.988813
690	33	16		50	1.0
691		66	33		1.0
692	16		33	50	1.0
694		40		60	1.0
695	40		60		1.0
696		40	60		1.0
698	40	60			1.0
699	60	40			1.0
844	37			62	1.0
857	42		57		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain