SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene14437

Length: 502 nt

UniGene Fasta

>sp_v2.0_unigene14437
ATGGGGGAGGTAGTAATTGGTCTCGGGAATCGAACCACATTGAGCGAACTTTGATGGCCACTCCTACAATTAAGATCACTGAGGTATTGATTAGACAGGATATCATAATATTTTTTCTATAGATCTGTCGGTAGATCTCGTAAAGACACAGAAATGTGGGCCTGAGGATAGGTTGAGGACCAATGAAGCAAACAATTGGGTAACCTTTCATAGTCCATTATCTGCTGCTTCCCTCGAAGCTTGAAATGCAGTTTTAACCAAACAAAACCATACGTCTGGTCCGCAAACACAGTAGACAAAATGAAGGGAAGAGGATCTCAGTCTCGCAGTATAATGCTTCGCGCTCGCATATCGACTATTATGCTCTCCATGGCTGCAGTTATGGCTTCCATTTACGTTGCCGGACGTTTGTGGCAGGAGTCAGAGGGTAGGATTTATCTTTCTAAAGAACTTGACAGAAGAACTGGTCAGGGACAACCAGCTATATCTGTGGATGATACGC

Ace file of the UniGene sp_v2.0_unigene14437

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	beta 1,3-glycosyltransferase-like protein I [Solanum lycopersicum]	-	-	3.0e-15	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	98%
Blast2go	probable beta- -galactosyltransferase 11-like	-	-	4.27218e-34	78%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein glycosylation	GO:0006486	Biological Process	4.27218e-34	78%
Blast2go	galactosyltransferase activity	GO:0008378	Molecular Function	4.27218e-34	78%
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	4.27218e-34	78%
Blast2go	integral to membrane	GO:0016021	Cellular Component	4.27218e-34	78%
Blast2go	mitochondrion	GO:0005739	Cellular Component	4.27218e-34	78%

Source	InterPros	Term	Type	e value	Identity
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	0.0	-
Sma3	Glycosyl transferase, family 31	IPR002659	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NVS4

Fln msg: Distance to subject end: 273 aas, your sequence is shorter than subject: 67 - 340

Fln protein: MKGRGSQSRSIMLRARISTIMLSMAAVMASIYVAGRLWQESEGRIYLSKELDRRTGQGQPAISVDDT

Protein Length: 68

Fln nts: ATGGGGGAGGTAGTAATTGGTCTCGGGAATCGAACCACATTGAGCGAACTTTGATGGCCACTCCTACAATTAAGATCACTGAGGTATTGATTAGACAGGATATCATAATATTTTTTCTATAGATCTGTCGGTAGATCTCGTAAAGACACAGAAATGTGGGCCTGAGGATAGGTTGAGGACCAATGAAGCAAACAATTGGGTAACCTTTCATAGTCCATTATCTGCTGCTTCCCTCGAAGCTTGAAATGCAGTTTTAACCAAACAAAACCATACGTCTGGTCCGCAAACACAGTAGACAAA_-_ATGAAGGGAAGAGGATCTCAGTCTCGCAGTATAATGCTTCGCGCTCGCATATCGACTATTATGCTCTCCATGGCTGCAGTTATGGCTTCCATTTACGTTGCCGGACGTTTGTGGCAGGAGTCAGAGGGTAGGATTTATCTTTCTAAAGAACTTGACAGAAGAACTGGTCAGGGACAACCAGCTATATCTGTGGATGATACGC

Fln Alignment:

Contig14437___MKGRGSQSRSIMLRARISTIMLSMAAVMASIYVAGRLWQESEGRIYLSKELDRRTGQGQPAISVDDT
A9NVS4_______________MKGRGSQARSIMLRARISTIMLSMAAVMASIYVAGRLWQESEGRIYLSKELDRRTGQGQPAISVDDT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain