SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene14268

Length: 351 nt

Origin of reads: Uma v2

UniGene Fasta

>sp_v2.0_unigene14268
CTCACCATGCCGCACTCATTTGGTCTACGCTCCAAGACTCGAGATCTTTTCCAAAAGGATTTCAGGAAGCACGGCCCTCGCGCCACTCAGACATACCTGAAGACATACCACATTGGCCAAATTGTTGACATCAAGGCCGATGCTGGTCAACACAAGGGTATGCCCCACAAGTTCTACCACGGCAAGACTGGCCGTGTTTGGAACGTCACCCCTCGTGCAGTTGGTGTTGAGGTGAACAAGCTCGTTGGCAACCGTATCATCCCTAAGCGCATCCACGTCCGCATTGAGCACGTCAAGCACAGCAAGTGCAGACAAGACTTCCTCAACCGTGTTTCTAAGAACGAGAAGATC

Ace file of the UniGene sp_v2.0_unigene14268

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	60S ribosomal protein L21 n=2 Tax=Postia placenta Mad-698-R RepID=B8P5U9_POSPM	-	-	1.0e-39	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	60%
Blast2go	60s ribosomal protein l21	-	-	0.0	79%

Source	GOs	Term	Type	Identity
Blast2go	translation	GO:0006412	Biological Process	79%
Blast2go	structural constituent of ribosome	GO:0003735	Molecular Function	79%
Blast2go	ribosome	GO:0005840	Cellular Component	79%
Blast2go	cytosol	GO:0005829	Cellular Component	79%

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein L21e	IPR001147	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	Pre-mRNA-splicing factor 19	IPR013915	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	Ribosomal protein L21e, conserved site	IPR018259	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NK51

Fln msg: Distance to subject end: 50 aas, your sequence is shorter than subject: 115 - 165

Fln protein: MPHSFGLRSKTRDLFQKDFRKHGPRATQTYLKTYHIGQIVDIKADAGQHKGMPHKFYHGKTGRVWNVTPRAVGVEVNKLVGNRIIPKRIHVRIEHVKHSKCRQDFLNRVSKNEKI

Protein Length: 116

Fln nts: CTCACC_-_ATGCCGCACTCATTTGGTCTACGCTCCAAGACTCGAGATCTTTTCCAAAAGGATTTCAGGAAGCACGGCCCTCGCGCCACTCAGACATACCTGAAGACATACCACATTGGCCAAATTGTTGACATCAAGGCCGATGCTGGTCAACACAAGGGTATGCCCCACAAGTTCTACCACGGCAAGACTGGCCGTGTTTGGAACGTCACCCCTCGTGCAGTTGGTGTTGAGGTGAACAAGCTCGTTGGCAACCGTATCATCCCTAAGCGCATCCACGTCCGCATTGAGCACGTCAAGCACAGCAAGTGCAGACAAGACTTCCTCAACCGTGTTTCTAAGAACGAGAAGATC

Fln Alignment:

Contig14268___MPHSFGLRSKTRDLFQKDFRKHGPRATQTYLKTYHIGQIVDIKADAGQHKGMPHKFYHGKTGRVWNVTPRAVGVEVNKLVGNRIIPKRIHVRIEHVKHSKCRQDFLNRVSKNEKI
A9NK51_______________MPAGHGVRARTRDLFARPFRKKGYAPISTYLRTFKIGQYVDIKVNGSIHKGMPHKFYHGRTGVVWNVTKRAIGVEMNKQVRNKIIKKRIHVRIEHVQPSRCAQDALLRRKNNDQL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain