SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene14252

Length: 1141 nt

Origin of reads: Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene14252

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	terminal flower-like protein [Picea abies] gb\|ADE77648.1\| unknown [Picea sitchensis]	-	-	7.0e-34	86%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	97%
Blast2go	flowering locus t-like protein	-	-	1.48445e-40	87%

Source	InterPros	Term	Type	e value	Identity
Sma3	Phosphatidylethanolamine-binding, conserved site	IPR001858	-	0.0	-
Sma3	Phosphatidylethanolamine-binding protein PEBP	IPR008914	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
383		25		75	0.996473
476		33		66	0.997452
703			50	50	1.0
705	50		50		1.0
706			50	50	1.0
707		50	50		1.0
751		85	14		0.993533
752			14	85	0.993533
820		14		85	0.993533
825		12	87		0.992554
827	75			12	0.975346
828	87	12			0.992554
830	87			12	0.992554
832	12			87	0.992554
834	87	12			0.992554
845	12			87	0.992554
846		12	87		0.992554
1004		25		75	0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
708	727	ACCTCC ACCTCC ACCTCC AC	20

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain