SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene14244

Length: 1911 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene14244 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF579 domain containing protein	-	-	1.0e-26	26%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	59%
Blast2go	protein	-	-	0.0	63%

Source	GOs	Term	Type	Identity
Blast2go	xylan biosynthetic process	GO:0045492	Biological Process	63%
Blast2go	secondary cell wall biogenesis	GO:0009834	Biological Process	63%
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	63%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Xylan biosynthesis protein IRX15/IRX15L	IPR006514	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AA34

Fln msg: your sequence is longer than subject: 325 - 101

Fln protein: MKTVAKLVVLQSTIHRLQKHGHRLWLLVFISCLMFASFSALLMKQIHFFQDGSYEYSEIASSSNRSTVGIIPKDVIGALLHYAVSSTSPQISQEEIRVIANAVLQKSPCNVLVFGLGHESLLLRILNFEGRTVFLDESENWVNRFEEKHPQMEAYEVQYTTKVSESNQLLALAKEQRGADCGPVQNLLFSDCKLAINDLPNNIYDVGWDVIFIDGPRGYFPGAPGRMSAIFTAAVLARSKKEDKVTDIFVHDSNREVEKAYSTEFLCRENLVSTVGMLAHYRVRTIAKDSMEFCTVNATTRAPLPSNSKTRKRTKIGMTSLVGE*

Protein Length: 326

Fln nts: GGCCAACAGTCTGATAGATTCTGCACAGTGGGTACTATGAAAAAACCCCATTATCTATGAGTCTGCAAATATAGAAGATCTTCATCTCCTTGCCAGTTGATAACCAGTCTATTCTCACCAGTTTTTATTGCACGGCTACACACCTCCAGGATTGTTTTAAG_-_ATGAAAACAGTTGCAAAGTTAGTTGTGTTGCAGTCCACTATCCACAGACTGCAGAAACATGGTCATCGTCTGTGGCTTCTTGTATTCATTTCATGCCTTATGTTTGCTTCGTTTTCTGCATTATTAATGAAGCAAATCCACTTTTTCCAAGATGGTAGTTATGAGTACAGTGAGATCGCCAGTTCTTCCAACAGATCGACTGTTGGTATCATTCCAAAGGATGTCATTGGAGCTCTTTTGCACTATGCTGTATCCAGTACTTCTCCTCAGATAAGCCAGGAAGAGATCAGGGTAATTGCAAATGCAGTGCTTCAGAAGAGTCCCTGCAATGTTTTGGTCTTTGGGTTAGGACATGAAAGCTTGCTGTTGAGAATCCTCAATTTTGAAGGAAGGACTGTGTTTTTAGACGAGAGTGAAAATTGGGTCAACAGATTCGAGGAAAAACATCCACAAATGGAGGCTTATGAGGTTCAATATACAACCAAAGTCAGTGAATCCAACCAGCTCCTGGCTTTGGCTAAGGAACAGCGTGGGGCAGATTGTGGGCCTGTGCAAAATCTTCTGTTCTCTGATTGCAAGCTTGCTATAAATGATCTGCCTAATAATATATATGATGTGGGGTGGGATGTGATTTTCATTGATGGTCCTAGAGGGTATTTTCCAGGAGCCCCAGGAAGGATGTCTGCTATTTTTACTGCTGCTGTCTTGGCGAGAAGCAAGAAGGAGGATAAAGTCACGGACATTTTTGTCCATGACTCTAACAGGGAGGTGGAGAAAGCTTACAGCACTGAGTTTTTGTGCAGAGAAAATCTGGTTTCCACTGTCGGGATGTTGGCTCATTATAGGGTCAGGACCATAGCCAAGGATTCAATGGAGTTCTGCACTGTAAATGCCACTACCAGGGCTCCATTGCCATCCAACTCCAAGACAAGGAAGCGCACCAAGATTGGTATGACTTCATTGGTAGGGGAATAA___GAAATAGCTCCGATGGGTTTTGACGTTGGCTGTCCCTCAACATAACCTGGATTTTCTCGGTATATAGATTCAGTCATTCTCAGCTGCTGCTGAAGACAGAAATGTTGCAATATGTATAAATGCTATATTGTCAAAGGATGATGCTGATCTCTGATTCTAGTTATTGAGAGATCTCCAATGAATAAGATGTTGTACATAATGGAGCCAACTGGATGAGAAAGGAACTGCTAAAAGTTCCTGATGCGGGAGATCATTACAGTCTTGCTTCAGGTTAACTGAATTTTGGTTTCCATGATTATGTCGGTTACTGGTTATTATTATTCCGTAGTTATATGTTGCAATCCTTGAGTTAAAGACTGTTAAGTCTCAGTCCTCCTGCGGCATGCTGTGTGAAGCCTATGGGAGTTGTGCTAAAATCTGCAGCGGTGTCTTGATTTAGTATAATCCAGGACTCTTGTCATTATGTTTTCTGGGGGTAAACTATGGGATTATTTTAATAAAGTTGTTCTGTAATCTGATGCTTATGTGATAGCAGTCCTATGCCCTAAATGCTACAAGAAGCTCTGATTTTTTTTCAAATTTCTTCAGATGCCACATGAAGATTTCTTCAAAGACTGCATACTATTAGAGTGTGTTATAGGTTTTCATTTTCCACTTTGGCCGATTATGCTATGAAGTGTATTTGGGCTCTGGTACAATGAGATGCAGTCTCAAACTCTGTTGAGACTCTGCTCATCTAAAAAGTTTTTAAAATCAATTTCATACGGTATTGACT

Fln Alignment:

Contig14244___IDGPRGYFPGAPGRMSAIFTAAVLARSKKEDKVTDIFVHDSNREVEKAYSTEFLCRENLVSTVGMLAHYRV
D5AA34_______________IDAPRGYFPEAPGRMTAIYSAGVMARNRKREGNTDIFVHDVDRAVEEKYSKAFLCENNLVEFEGRLWHFSV

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
1131		85		14	0.993533
1154	12		87		0.992554
1157			87	12	0.992554
1158	87			12	0.992554
1306	16			83	0.994512
1307		16	83		0.994512
1308	16			83	0.994512
1324		20		80	0.995493
1418	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain