SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
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ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene14151

Length: 464 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene14151
CGTCGTGACCTTGGCTGTCACTCATCTTGTAATGATAAAACAGAGTCTGCATGTGATGCCTCTGTTAGTGAAAATGGTAGTCTTCACAATATACCAATTTCTTTGTCTCCCACTTTAAGCATTGTACCCTCCCCTTCATGTCCCATTCTTCAGTCTCCACCGCTTAGTGTCTCCCCACGGGTTCAAGAAGGTAGGAGGAGTGTGAACAAATCGCTTTGTAAGTCAACTTTGTCTCTCCTCCAAATGAAGATAGAAACTCTGGGTTTGGTTCAGAGATGTTGAACTTATCCTTTGCGCAGTCTGTCAGGAAGAGTACCCATCCTCTGTCCAATAAAAGCGGCAATTCAAGAACAGATAAATTGGCTGCTAGTCTCCAACGTGGCCTTCAAGTTTTTGATATTCACCAACAAAATTCAGCTTTAAGAAAATCTTCTGTAAGATTCTCTTTCCAAACTTTAAACCTG

Ace file of the UniGene sp_v2.0_unigene14151 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Carboxy-terminal kinesin, putative n=1 Tax=Ricinus communis RepID=B9RRL2_RICCO	-	-	2.0e-11	39%
FL-Next	tr=Carboxy-terminal kinesin, putative; Ricinus communis (Castor bean).	-	-	0.0	39%
Blast2go	uncharacterized protein	-	-	1.84264e-13	59%

Source	GOs	Term	Type	e value	Identity
Blast2go	cellular process	GO:0009987	Biological Process	1.84264e-13	59%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	1.84264e-13	59%
Blast2go	microtubule motor activity	GO:0003777	Molecular Function	1.84264e-13	59%
Blast2go	intracellular part	GO:0044424	Cellular Component	1.84264e-13	59%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9RRL2

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 526 aas, your sequence is shorter than subject: 94 - 1282

Fln protein: RRDLGCHSSCNDKTESACDASVSENGSLHNIPISLSPTLSIVPSPSCPILQSPPLSVSPRVQEGRRSVNKSLCKSTLSLLQMKIETLGLVQRC*

Protein Length: 95

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCTTGTAATGATAAAACAGAGTCTGCATGTGATGCCTCTGTTAGTGAAAATGGTAGTCTTCACAATATACCAATTTCTTTGTCTCCCACTTTAAGCATTGTACCCTCCCCTTCATGTCCCATTCTTCAGTCTCCACCGCTTAGTGTCTCCCCACGGGTTCAAGAAGGTAGGAGGAGTGTGAACAAATCGCTTTGTAAGTCAACTTTGTCTCTCCTCCAAATGAAGATAGAAACTCTGGGTTTGGTTCAGAGATGTTGAACTTATCCTTTGCGCAGTCTGTCAGGAAGAGTACCCATCCTCTGTCCAATAAAAGCGGCAATTCAAGAACAGATAAATTGGCTGCTAGTCTCCAACGTGGCCTTCAAGTTTTTGATATTCACCAACAAAATTCAGCTTTAAGAAAATCTTCTGTAAGATTCTCTTTCCAAACTTTAAACCTG

Fln Alignment:

Contig14151___CHSSCNDKTESACDASVSENGSLHNIPISLSPTLSIVPSPSCPILQSPPLSVSPRVQEGRRSVNKS
B9RRL2_______________CHSGPSTGVSVACEANDSQNDTVNYASPS---SLSIVPCKVSPVLKSPTPSVSPRISSSRKSLRTS

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
269		75		25	0.996473
316	75			25	0.996473
326		25	75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain