SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene14021

Length: 1567 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene14021 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Dirigent-like protein n=1 Tax=Picea sitchensis RepID=A6YR01_PICSI	-	-	82%
FL-Next	tr=Dirigent-like protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	82%
Blast2go	dirigent-like protein	-	-	74%

Source	InterPros	Term	Type	e value	Identity
Sma3	Plant disease resistance response protein	IPR004265	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A6YR01

Fln msg:

Fln protein: MSRNYKDKYFINLPHLYICKFFHSPSMGAGLLFPVMAIIVIVFLQAAAGESETNMVFYMHDNLKGSNLSSFTIAGLNGSSSSPGKFGTLVVMSDAITKIPDSDSGSGNIVGRVQGTYVNTNLVTGLDFFMVFTLIFQNLEYNGSTLELQGTDRFDQPQCEYAVVGGTGKFRFARGYAVVTTQSSSGPNAVLKFNTTFLLP*

Protein Length: 202

Fln nts: AATGTACATCTCTGCAACGTACTCTCCAGCTGTTGAGGCAGCGCATTCCTCAGAGCTTACCCCATCTTCATACACATACCTCGGCCTCTAATTCTGCTCTCACACTTGAGCTCCATGCCCATTCTGCTACTCGACTGCAGGCACAACAAAGGGAGGCTTCATTGCAAGAGGAAAATGCAGCTTGACAGAGCAACTAATGACCAAGCAGGCACAGGCAGAAGCATTTGCGAACGAGAGGAATGCCCTTGAGTTCCAGTTAGAAGCAGCAAGCGAGACAAGAAGGCAATTGCATCTTGTGAATGCGGAGACAAACTTTAAGAGAAACAAAATAGGGAGTTCTGGGATAATATCAACAATGACCCCTGCAAGTGGAACTTATGACATCAGCGAATCAAAGGTGCATTCTGAAGTTTCAAAAACTGCAATCTGTCCAAGGGTGGTTAAAGCATTTCTAGAGAGTGGAAGCAACCTTACACAGGCAGTGGATGCTTTTTGCTTCAAAACAGGAGGCCATCGGAGATTTATGCTGTTCCGTTCCTTGATTGCTGTGTATATCTTAGCCCTTCATATTGTTGTGTTTATTATAATTTCATTTGCACAGTTGGGTCGATAACATTAAGATTTTAGGAAAAAAAGCTTCTATGTAGCATGGTGTCTTATGAATGAACTTATGTTATCTCTATAAACAATTTATTTCCTGAACACTTTGGTTGGAAATAATTTGTAAAATTATCGAGGAAATCG_-_ATGTCAAGAAACTACAAAGACAAGTACTTTATCAATCTCCCCCATCTGTATATTTGTAAGTTCTTTCATTCCCCTTCCATGGGTGCCGGGCTTTTGTTTCCAGTCATGGCTATCATCGTCATCGTCTTCCTGCAGGCTGCTGCGGGTGAAAGTGAGACCAACATGGTGTTCTACATGCACGACAATTTGAAAGGGAGCAACCTCAGTTCCTTTACAATTGCGGGATTAAATGGCTCTTCTTCAAGCCCGGGCAAGTTTGGAACCCTCGTAGTTATGAGCGATGCCATAACCAAAATTCCTGACTCCGATTCTGGCTCTGGCAATATTGTGGGCCGAGTGCAAGGAACGTACGTGAATACAAATCTGGTTACTGGGCTTGATTTCTTCATGGTTTTCACGCTCATCTTTCAGAATTTGGAGTACAACGGCAGCACTCTGGAGTTGCAGGGAACCGACAGGTTCGATCAACCGCAGTGTGAGTATGCGGTGGTTGGAGGGACGGGCAAGTTCAGGTTTGCTCGTGGGTATGCGGTTGTTACGACGCAATCCAGTTCCGGGCCCAATGCTGTTCTCAAATTCAACACCACTTTTCTTCTCCCGTAG___TATTCAAAACGGTGTTTATGAGTCAATATTTTCGTTTTATCACAAATAAGGTCATTGTATCACAAACAATGGTGTTTATAGGTCAATGTTTTCGATTTTATCACAAATAAGGTCATTGTATCACAAACAATGGTGTTTATGAGTCAATATTTTCACTTTTGATGAAAGGATGATCAAGAATATATTAATGATAATTATTTTGTTCTTAATAGTTCATTTA

Fln Alignment:

Contig14021___MGAGLLFPVMAIIVIVFLQAAAGESETNMVFYMHDNLKGSNLSSFTIAGLNGSSSSPGKFGTLVVMSDAITKIPDSDSGSGNIVGRVQGTYVNTNLVTGLDFFMVFTLIFQNLEYNGSTLELQGTDRFDQPQCEYAVVGGTGKFRFARGYAVVTTQSSSGPNAVLKFNTTFLLP
A6YR01_______________MSSRLLFPVMAVIVIVFLQAAAGESEMNIVVYMHDNLTGRHQTSFPVAGLNGSSSNPGKFGTLVVISDAITKRPYVNTNPGNIVGRAQGTYVNTNPVTGLDFFMVFTLIFQNMEYNGSTLEIQGTDRFDQPQCEYAVVGGTGKFRFARGYAVVTVESASGPNAVLKFNTTFLVP

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
82	16			83	0.994512
112		14		85	0.993533
200		16		83	0.994512
362	90		10		0.90298
787	40			60	1.0
788		20		80	0.995493
789			20	80	0.995493
918		12		87	0.992554
1168		75	25		0.996473
1173		25		75	0.996473
1174		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain