SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene13925

Length: 807 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene13925 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	protein kinase family protein [Arabidopsis thaliana] gb\|AAK43919.1\|AF370600_1 putative protein kinase [Arabidopsis thaliana] gb\|AAB80675.1\| putative protein kinase [Arabidopsis thaliana] gb\|ACI49790.1\| At2g33580 [Arabidopsis thaliana] gb\|AEC08855.1\| prote	-	-	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	51%
Blast2go	protein	-	-	70%

Source	GOs	Term	Type	Identity
Blast2go	cellular protein metabolic process	GO:0044267	Biological Process	70%
Blast2go	phosphorylation	GO:0016310	Biological Process	70%
Blast2go	binding	GO:0005488	Molecular Function	70%
Blast2go	protein kinase activity	GO:0004672	Molecular Function	70%
Blast2go	receptor activity	GO:0004872	Molecular Function	70%
Blast2go	ribonucleoprotein complex	GO:0030529	Cellular Component	70%
Blast2go	plasma membrane	GO:0005886	Cellular Component	70%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Peptidoglycan-binding Lysin subgroup	IPR002482	-	-
Sma3	Gnk2-homologous domain	IPR002902	-	-
Sma3	Adenovirus E3 region protein CR2	IPR003470	-	-
Sma3	Immunoglobulin-like	IPR007110	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	SKG6/AXL2 alpha-helix transmembrane domain	IPR014805	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Beta-ketoacyl synthase, active site	IPR018201	-	-
Sma3	Peptidoglycan-binding lysin domain	IPR018392	-	-

Full-Lengther Next Prediction

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
154		66		33	0.997452
159		33		66	0.997452
161			66	33	0.997452
246		33	66		0.997452
270			66	33	0.997452
284	33	66			0.997452
310	75	25			0.996473
312			25	75	0.996473
318	25			75	0.996473
324		50		50	1.0
335		28		71	1.0
351	25			75	1.0
371	88		11		0.923564
372		88		11	0.923564
374	12		87		0.992554
376	12			87	0.992554
377			12	87	0.992554
378		12		87	0.992554
380		75	12	12	0.975346
383	12	87			0.992554
398		14	85		0.993533
424		14	85		0.993533
458	85		14		0.993533
485		71	14	14	0.984337
579		16		83	0.994512
580			83	16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain