SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene13884

Length: 1485 nt

Origin of reads: Biogeco3 v1 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene13884

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	serine/threonine protein kinase isolog [Arabidopsis thaliana] gb\|AAO30076.1\| serine/threonine protein kinase isolog [Arabidopsis thaliana]	-	-	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	42%
Blast2go	probable receptor-like protein kinase at1g11050-like	-	-	61%

Source	GOs	Term	Type	Identity
Blast2go	phosphorylation	GO:0016310	Biological Process	61%
Blast2go	protein kinase activity	GO:0004672	Molecular Function	61%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	61%

Source	InterPros	Term	Type	Identity
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Epidermal growth factor-like domain	IPR000742	-	-
Sma3	S-locus glycoprotein	IPR000858	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Bulb-type lectin domain	IPR001480	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Alpha-isopropylmalate/homocitrate synthase, conserved site	IPR002034	-	-
Sma3	Chaperonin TCP-1, conserved site	IPR002194	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3	Peptidoglycan-binding Lysin subgroup	IPR002482	-	-
Sma3	Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB	IPR002523	-	-
Sma3	Gnk2-homologous domain	IPR002902	-	-
Sma3	Apple-like	IPR003609	-	-
Sma3	Epidermal growth factor-like	IPR006210	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	PAN-2 domain	IPR013227	-	-
Sma3	SKG6/AXL2 alpha-helix transmembrane domain	IPR014805	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Beta-ketoacyl synthase, active site	IPR018201	-	-
Sma3	Heat shock protein DnaJ, conserved site	IPR018253	-	-
Sma3	Peptidoglycan-binding lysin domain	IPR018392	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LPC1

Fln msg: Distance to subject end: 137 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 483 - 611

Fln protein: MKMESILLLLLLLNRAMASDTECPMALDYVHQLLWDKSSCQTPINKANCCQILRGLLGIGLAQYLRDASKFELPSNASAVSCFEQFQLQLDSVGLSPDLLGNCFVNTSEFVSSADLCAGIQTKEDWLRKVKNTPMDSACKGDLADVGACLQCTQSGGLVTKILVDTYKNLTNEATSMKCFYFTCLYAAGVVNEFGPKNINTAQCILRVPFVQTASDSRVLAYALMGTALAAALICGLGIFYTLWVRRIDPKAILHRRFVKRNQKVLKTAMKPNTGAVWFDIRLIRDATDNFSETNFIGQGGFGTVYRGTLPDGRQIAVKRIRNCTREGDSEFLNEVEIINNIKHRNLVVLRGCCVASDEKEGHQRFLIYDYMPNGSLADHIFGRESKARPLSWPQRRNIVLGTAKGLAYLHDGVEPAIYHRDIKATNILLDDEMNACVADFGLARMMTKGGESHITTKVAGTHGYLAPEYALYGQLTDKSDVY

Protein Length: 484

Fln nts: ATGGGGGAAGAAACAGTAGCGTTTGTGAGAACTAA_-_ATGAAAATGGAGAGCATCCTGCTGCTACTGTTGCTGTTGAATAGGGCGATGGCCTCTGATACGGAATGTCCGATGGCTCTTGATTATGTCCATCAATTGCTGTGGGACAAGTCTTCCTGTCAAACGCCGATTAATAAAGCCAATTGCTGCCAGATATTGCGTGGATTGCTCGGCATAGGATTGGCTCAGTATTTGAGAGATGCATCCAAATTCGAGCTCCCGAGTAATGCCTCTGCCGTGTCCTGTTTCGAGCAATTTCAACTGCAGCTGGACTCTGTGGGTCTCTCACCAGACTTGCTGGGAAACTGCTTCGTGAATACTTCTGAGTTTGTTTCTAGCGCAGACCTTTGCGCAGGCATACAGACCAAGGAGGACTGGCTTCGCAAAGTGAAGAATACTCCCATGGATTCGGCCTGCAAAGGCGACCTCGCAGATGTAGGCGCCTGTCTGCAGTGCACGCAAAGTGGAGGTCTCGTTACCAAGATACTGGTGGACACCTACAAAAATTTGACGAACGAGGCAACAAGTATGAAATGCTTTTATTTCACTTGTCTGTATGCGGCCGGAGTGGTTAATGAGTTCGGCCCCAAGAACATAAATACTGCTCAGTGTATCCTCCGCGTGCCCTTTGTCCAAACCGCGTCGGATAGCCGAGTTTTGGCATACGCTTTGATGGGCACTGCCCTGGCCGCTGCCTTGATCTGTGGTCTAGGGATTTTCTACACTTTGTGGGTGAGGAGGATTGATCCTAAGGCTATACTGCACAGGCGATTCGTAAAGCGCAATCAGAAAGTTCTAAAGACAGCCATGAAACCCAACACCGGGGCAGTGTGGTTCGACATTCGATTGATCAGGGACGCCACCGATAATTTCAGTGAAACCAATTTCATCGGTCAAGGGGGTTTCGGTACAGTATACAGAGGAACGCTCCCGGATGGTCGGCAGATAGCTGTGAAGAGAATCAGAAACTGCACGCGCGAGGGGGATTCCGAATTCCTCAACGAAGTGGAGATCATTAACAATATCAAGCACAGGAATCTGGTTGTTTTGAGGGGATGCTGCGTAGCCAGCGATGAGAAGGAAGGGCACCAGCGGTTTCTGATATATGATTATATGCCCAATGGAAGTCTGGCCGATCATATATTTGGACGAGAGTCGAAGGCGCGGCCTTTGAGCTGGCCGCAGCGTAGGAACATCGTCCTTGGAACAGCCAAAGGGCTGGCTTATCTGCACGACGGTGTCGAGCCCGCGATTTATCACAGAGACATCAAAGCCACTAACATTCTGCTGGATGACGAAATGAATGCTTGTGTGGCCGATTTTGGTCTGGCGAGAATGATGACTAAAGGAGGAGAATCCCATATCACCACTAAAGTAGCAGGGACGCATGGCTATTTGGCCCCTGAATATGCTCTCTATGGTCAGCTCACAGATAAGAGCGATGTATATA

Fln Alignment:

Contig13884___LGIGLAQYLRDASKFELPSNASAVSCFEQFQLQLDSVGLSPDLLGNCFVNTSEFVSSADLCAGIQTKEDWLRKVK---NTPMDSACKGDLADVGACLQCTQSGGLVTKI-LVDTYKNLTNEATSMKCFYFTCLYAAGVVNEFGPKNINTAQCILRVPFVQTASDSRVXXXXXXXXXXXXXXICGLG-IFYTLWVRRIDPKAILHRRFVKRNQKVLKT-------AMKPNTGAVWFDIRLIRDATDNFSETNFIGQGGFGTVYRGTLPDGRQIAVKRIRNCTREGDSEFLNEVEIINNIKHRNLVVLRGCCVASDEKEGHQRFLIYDYMPNGSLADHIFGRESKARPLSWPQRRNIVLGTAKGLAYLHDGVEPAIYHRDIKATNILLDDEMNACVADFGLARMMTKGGESHITTKVAGTHGYLAPEYALYGQLTDKSDVY
B8LPC1_______________LHLVLAEYLRTEGLFLPPANTSE-SCWSAFHTELNSQDPSFDFRKSCGFDNS---SISQGCMNITTQQEFEKQVSLISRQTLTKACNQTLTS-SPCAQCTAALTSTQAISLPGPSGNLTD------CSAYSSIYAAAILNKAGPTDKNTAWCLF---FIGLNLSSGKNSAWIYGAVAAGVSVCVLGAVVGFLYCRR--------RRARMEKKKVLAEFEASDPCSMNPNSTLVRFTIEDIRAATKNFARENIVGTGGFGNVYKGVLADGSLVAVKRFKNCSPAGDPEFVHEVDVISSIRHRNLVALRGFCVAPGSLEGHQRILVCEFIPNRSLHDNLFDHRRSERRLDWPTRCQIAVGMARGLAYLHHEIQPGIIHRDIKASNILLDENFNARVADFGLAKFAPE-GVSHLSTRVAGTLGYVAPEYALYGQLTEKSDVY

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
404	66			33	0.997452
407		33	66		0.997452
845	25	75			0.996473
849			75	25	0.996473
894	33		66		0.997452
959		80	20		0.995493
960	80		20		0.995493
1241	33	66			0.997452
1243	33			66	0.997452
1247	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain