SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene13863

Length: 821 nt

Origin of reads: Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene13863 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DegP protease-like n=3 Tax=Oryza sativa RepID=Q6ZIR2_ORYSJ	-	-	7.0e-30	52%
FL-Next	sp=Protease Do-like 7; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	46%
Blast2go	protein	-	-	6.93744e-33	67%

Source	GOs	Term	Type	e value	Identity
Blast2go	photoinhibition	GO:0010205	Biological Process	6.93744e-33	67%
Blast2go	serine-type peptidase activity	GO:0008236	Molecular Function	6.93744e-33	67%
Blast2go	chloroplast	GO:0009507	Cellular Component	6.93744e-33	67%

Source	InterPros	Term	Type	e value	Identity
Sma3	PDZ domain	IPR001478	-	0.0	-
Sma3	Peptidase S1C, HrtA/DegP2/Q/S	IPR001940	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
357		60		40	1.0
386		33		66	1.0
390	80	20			0.995493
431	40	60			1.0
483			33	66	0.997452
487			33	66	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
586	613	GA GA GA GA GA GA GA GA GA GA GA GA GA GA	28

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain