SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene13783

Length: 1858 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene13783

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam00026, Asp, Eukaryotic aspartyl protease	-	-	2.0e-32	26%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	89%
Blast2go	aspartic proteinase-like protein 2-like	-	-	0.0	74%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on peptide bonds (peptide hydrolases), Aspartic endopeptidases.	EC:3.4.23.-	-	0.0	74%

Source	GOs	Term	Type	Identity
Blast2go	proteolysis	GO:0006508	Biological Process	74%
Blast2go	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	74%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	74%

Source	InterPros	Term	Type	e value	Identity
Sma3	Peptidase A1	IPR001461	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LMX2

Fln msg:

Fln protein: MQQLHANREGSSSANNGRGMSSEHFEMLKAHDRARHGRILNTIVDFTLQGTADPFVAGLYYTRIELGTPPRPYYVQIDTGSDILWVNCKPCNACPLTSGLGISLNFFDPQGSSTARPLSCIDSKCVSANQISESVCTTDRYCGYSFEYGDGSGTLGYYVSDELHYNQYVNQYMTNNSSALITFGCSYNQSGDLTKSDRAVDGIFGFGQNDLSVVSQLNSQGLAPKIFSHCLEGEDRGGGILVLGEITEPGMVYTPIVPSQPHYNLNLKGIAVNGQQLSIDPQVFATTNNRGTIVDCGTTLAYLAEEAYNPFVNSIATAVSQYTQPFILKGNPCFLTVHSIDEIFPSVTLYFEGAPMDLKPRDYLFQQLSPQDTSPVWCIGWQKSGQQATDSSKMTILGDLVLKDKAFVYDLQNQRIGWTNFDCSSTVNVSVATGESKSIDSGKLNSNGSPPSRILKELDIKLCYCFLFMMSSIVILYSNK*

Protein Length: 482

Fln nts: GAGAAATCGACCAGGTACCCGATCCACCGCAGGAGGCCACATAATTTCCCGAAAAAACCGGCCTTAAGTAGCTTGACAATAATTATTTTAATAGTTACAGTAATAAATGCTTTCGGTCACCTAGCCTCTGGAGCTGCCCAGAGCGGCATAAAG_-_ATGCAGCAACTTCATGCCAACCGGGAAGGTTCCAGCTCTGCAAATAACGGCAGAGGAATGAGTAGCGAGCATTTCGAAATGCTTAAAGCTCATGACAGAGCAAGGCATGGGCGTATTCTCAACACAATTGTGGATTTTACTCTGCAGGGCACAGCGGATCCTTTTGTTGCCGGTCTGTACTACACCAGAATTGAGCTGGGCACGCCACCCAGGCCATATTATGTTCAAATCGACACAGGGAGTGACATATTATGGGTGAATTGCAAGCCCTGTAATGCCTGCCCTTTAACAAGTGGTCTTGGGATCTCTCTTAATTTCTTTGATCCCCAAGGATCATCAACAGCGAGGCCTCTCTCTTGTATAGATTCAAAATGTGTTTCTGCAAATCAAATTTCAGAGTCTGTCTGCACTACTGATCGTTACTGTGGTTACTCTTTTGAGTATGGCGATGGAAGTGGTACTCTTGGTTACTACGTGTCTGATGAATTGCACTATAATCAATATGTAAATCAGTATATGACAAACAATTCTTCTGCCTTGATTACTTTTGGGTGCAGCTACAACCAATCTGGTGACTTGACGAAGTCAGATAGGGCCGTGGATGGCATTTTTGGGTTTGGGCAGAATGATCTTTCTGTGGTTTCTCAGCTAAACTCTCAAGGATTAGCACCAAAGATATTCTCCCATTGTTTGGAAGGAGAAGACCGTGGAGGAGGTATCTTGGTACTTGGAGAGATTACAGAACCAGGCATGGTGTATACTCCCATTGTTCCATCGCAGCCTCATTACAATCTGAATCTTAAGGGGATTGCTGTCAATGGGCAGCAGCTTTCCATTGATCCTCAAGTATTTGCAACAACAAACAATCGTGGAACAATTGTTGATTGTGGAACTACACTAGCATATCTTGCAGAGGAAGCTTATAATCCCTTTGTTAATTCGATTGCTACCGCAGTATCGCAATATACACAACCTTTTATTTTGAAAGGAAATCCATGTTTCTTGACGGTTCATAGCATCGATGAGATATTCCCCTCTGTTACACTCTACTTTGAGGGAGCACCCATGGACTTGAAGCCTAGAGATTATCTTTTTCAACAGTTATCGCCTCAGGATACGAGTCCTGTATGGTGTATAGGCTGGCAGAAGAGTGGACAGCAAGCAACGGATAGCTCAAAAATGACAATATTGGGAGATCTTGTTCTAAAAGACAAAGCTTTTGTCTATGACCTACAAAATCAGCGGATAGGCTGGACCAACTTTGATTGTTCTTCAACTGTTAACGTCTCAGTAGCTACTGGTGAAAGCAAGTCCATTGACTCTGGAAAGCTGAATAGCAATGGAAGCCCACCATCCAGAATACTGAAAGAGCTTGACATAAAATTGTGTTACTGTTTCTTGTTCATGATGTCTTCTATTGTAATTCTTTATAGCAACAAATGA___GAAAATTCTCATTCTTTATAACATATCGTAGCAAATACCAATCTAATAACGTCACTGTATTTTGTATCTCGTGGGCAAGAAATTGTAGATAATACGAAAATCAAGACTGATCATCCATAAGGTTTAGCATTCCCCACGGGATTGTGAATAGAGATGATGTTACCTGGATTTTCTCTCCTGTAATATGTGTTCCGCGGAGGAAGAGAATTACAGCATCTCGTTATAAAATCAAGCTTCACACCATACTGGTCTATTTTTGGGG

Fln Alignment:

Contig13783___MSSEHFEMLKAHDRARHGRILNTIVDFTLQGTADPFVAGLYYTRIELGTPPRPYYVQIDTGSDILWVNCKPCNACPLTSGLGISLNFFDPQGSSTARPLSCIDSKCVSANQISESVCTTDRYCGYSFEYGDGSGTLGYYVSDELHYNQYVNQYMTNNSSALITFGCSYNQSGDLTKSDRAVDGIFGFGQNDLSVVSQLNSQGLAPKIFSHCLEGEDRGGGILVLGEITEPGMVYTPIVPSQPHYNLNLKGIAVNGQQLSIDPQVFATTNNRGTIVDCGTTLAYLAEEAYNPFVNSIATAVSQYTQPFILKGNPCFLTVHSIDEIFPSVTLYFEGAPMDLKPRDYLFQQLSPQDTSPVWCIGWQKSGQQATDSSKMTILGDLVLKDKAFVYDLQNQRIGWTNFDCSSTVNVSVATGESKSIDSGKLNSNGSPPSRILKELDIKLCYCFLFMMSSIV
B8LMX2_______________MTGEHFEMLKAHDRARHGRSLNTIVDFTLQGTADPYVAGLYYTRIELGTPPRPFYVQIDTGSDILWVNCKPCNACPLTSGLGVALNFFDPRGSSTASPLSCIDSKCVSSNQISESVCTTDRYCGYSFEYGDGSGTLGYYVSDEFDYNQYVNQYVTNNASAKITFGCSYNQSGDLTKPDRAVDGIFGFGQNDLSVVSQLNSQGLAPKIFSHCLEGADPGGGILVLGEITEPGMVYTPIVPSQPHYNLNLQGIAVNGQQLSIDPQVFATTNTRGTIIDCGTTLAYLAEEAYEPFVNTIIAAVSQSTQPFMLKGNPCFLTVHSIDEIFPSVTLYFEGAPMDLKPKDYLIQQLSP-DSSPVWCIGWQKSGQQATDSSKMTILGDLVLKDKVFVYDLENQRIGWTSFDCSSTVNVSTDSGESKSFDTAKLNNNGSPPSRTLKELAINLCYCFLFLMSSIL

SNPs (tot: 63)

Position	A %	C %	G %	T %	Probability
246		25		75	0.996473
307			75	25	0.996473
986	90		10		0.90298
1138	14			85	0.993533
1139		14		85	0.993533
1150		20	80		0.995493
1151	20		80		0.995493
1152	80			20	0.995493
1153	80			20	0.995493
1192	25			75	0.996473
1194		75	25		0.996473
1195		75		25	0.996473
1326	66		33		0.997452
1327	66			33	0.997452
1330			66	33	0.997452
1331	66		33		0.997452
1334		33	66		0.997452
1337		66		33	0.997452
1338	66		33		0.997452
1339	66		33		0.997452
1340	66	33			0.997452
1341	66			33	0.997452
1342	66		33		0.997452
1344		33	66		0.997452
1347	66			33	0.997452
1437	66		33		0.997452
1438	66			33	0.997452
1443			25	50	0.995533
1445	50	25		25	0.995533
1446		50		50	1.0
1447			75	25	0.996473
1448	25			75	0.996473
1449		75	25		0.996473
1450			25	75	0.996473
1451		75		25	0.996473
1452	50		25	25	0.995533
1454		25		75	0.996473
1455	50	25		25	0.995533
1456	25		75		0.996473
1457		75		25	0.996473
1458		25		75	0.996473
1461	25			75	0.996473
1526			20	80	0.995493
1527			80	20	0.995493
1528	80	20			0.995493
1529	80		20		0.995493
1530	80			20	0.995493
1533		20	80		0.995493
1538	80		20		0.995493
1540		20		20	0.99255
1541	80		20		0.995493
1543	80	20			0.995493
1545	80	20			0.995493
1546	80			20	0.995493
1547		20		80	0.995493
1548	16	16		66	0.988813
1553			16	83	0.994512
1556		16		83	0.994512
1557			83	16	0.994512
1559			16	83	0.994512
1560			16	83	0.994512
1570		16	83		0.994512
1658		10		90	0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain