SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene13745

Length: 499 nt

Origin of reads: Biogeco1 v2

UniGene Fasta

>sp_v2.0_unigene13745
ATGGGGAAAAGGTGAGAGTTCTGCCAATGTGCAATCATGGTTTCCATTTGGAATGCATAGACGAATGGCTTGTTTCGTGTTATTCGTGTCCCGTGTGTAGACATTGTCCGAATCTCCATATTAGTAAGCCAGAAGGCGCTGCAATCGCTGAAGCCACCGAATCAAATAACGCCATGCATAGAGTCATAGAGGCCACCGATTCAACAGAGGCAATTTCGGCTAGGAACTGAAACCATGGAAATAACTCCAGAAGAATACCGAACTACGATTCCTCCACGGTTGCCTAGAGTATCTTAGCTATGTAAAAAAGAAGCTTAATCTTCGCATATATGAACGACGTGCGCTGAGTTGTTGACGCAATCTCTAGTTGGAAATACCATCGAAGATTGTATTGAGGCATCGTTAGGAGGGGTATCTCATACGCAATCGAGATAATGATTTCTAAAGTCGAGATATTAATGTTTGGCGCTGTAATAGCAGCGGTATGGTAGTTAGTTTA

Ace file of the UniGene sp_v2.0_unigene13745

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RING-H2 finger protein ATL72 [Arabidopsis thaliana] sp\|Q9SG96.1\|ATL72_ARATH RecName: Full=RING-H2 finger protein ATL72 gb\|AAF19558.1\|AC011708_1 putative RING zinc finger protein [Arabidopsis thaliana] gb\|AAO44037.1\| At3g10910 [Arabidopsis thaliana] dbj\|BA	-	-	1.0e-09	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	73%
Blast2go	protein	-	-	5.26785e-12	72%

Source	GOs	Term	Type	e value	Identity
Blast2go	zinc ion binding	GO:0008270	Molecular Function	5.26785e-12	72%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LPQ1

Fln msg: your sequence is shorter than subject: 76 - 186

Fln protein: GEKVRVLPMCNHGFHLECIDEWLVSCYSCPVCRHCPNLHISKPEGAAIAEATESNNAMHRVIEATDSTEAISARN*

Protein Length: 77

Fln nts: ATGGGGAAAAGGTGAGAGTTCTGCCAATGTGCAATCATGGTTTCCATTTGGAATGCATAGACGAATGGCTTGTTTCGTGTTATTCGTGTCCCGTGTGTAGACATTGTCCGAATCTCCATATTAGTAAGCCAGAAGGCGCTGCAATCGCTGAAGCCACCGAATCAAATAACGCCATGCATAGAGTCATAGAGGCCACCGATTCAACAGAGGCAATTTCGGCTAGGAACTGA___AACCATGGAAATAACTCCAGAAGAATACCGAACTACGATTCCTCCACGGTTGCCTAGAGTATCTTAGCTATGTAAAAAAGAAGCTTAATCTTCGCATATATGAACGACGTGCGCTGAGTTGTTGACGCAATCTCTAGTTGGAAATACCATCGAAGATTGTATTGAGGCATCGTTAGGAGGGGTATCTCATACGCAATCGAGATAATGATTTCTAAAGTCGAGATATTAATGTTTGGCGCTGTAATAGCAGCGGTATGGTAGTTAGTTTA

Fln Alignment:

Contig13745___GEKVRVLPMCNHGFHLECIDEWLVSCYSCPVCRH
B8LPQ1_______________GEGVRVLPSCNHGFHMECVDRWLLSHSSCPTCRH

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
72	25		75		0.996473
74			25	75	0.996473
75			25	75	0.996473
76		75	25		0.996473
283		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain