SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene13689

Length: 2205 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uma v2

UniGene Fasta

>sp_v2.0_unigene13689
ATGGGAACAAGAGGTCTATGCTGCACGAGAGAAGAATGGCATATATCTTCCACGTGAACGTTTCCTCCTGGATGAAGCTGAAAAAAAGGCTATGACAGAGAAGATAGAACAGTTGGAGGTAGAAATTGATGCCAAGAACAAGGGAATAGAGGAGTTGCAAGGACTCTACAATTATCAGCAACTTCTGAGTGCAGAATTTAGCAATAAGCTTGAGATGACCCAGAAAAAACTTGAGGATACTGAGTATGCCTTAGATGATCTCGAAGAGAAATACAGTCAGCTGAGCTGTACACTTAAGGAAAAAGAATTCATCATCTCCAACATGTTACAGTCAGAAAAAGCACTGGTTGAGCAGGCATGTGGTCTTCGGTCAGAACTAGAGAACACAACACAAGATGTATCAGGGCTCTTTTCTAAAATTGAGCGTAAGGATAAGATAGAAACTGGAAATAAAGAACTAGTCCAGACATTTCGAATACAGTTAACTCAGCAGCTTGAAGTGTTGCATAAGACTGTTGAAGGTTCTGTGAGCCAACAACAACGGCAGCTACAAACTATGGAAGATCAAATGCAATCCTTTGTCTCCACAAAAACTGAGGCTACAGAAGATCTCAGAAATAGGGTTGAGAATTTGAAGACAATCTATGGCTCTGGAGTCAGGGGCTTACATGATCTAGCCAATGCACTCGATGAAAATTCTGTGTCTACTCTTGGCAGGCTCAACTCAACAATATCCATGCACGCTTCTACTCTTGAGAATCTGGTGGGAAAAACTGTTCTAGATGCAGAGGCATTGCTGAGTGAACTTCATAGTGCTCTGTCCAAGCAAGAGGCCACAATGGCTTTATATGCCCAACAACAGCGGGAGGCAATTCAAAGAACTATAGAGTCCACGAGGGTAATTTCAAAGGTGAACACAGATTTCTTTGCAACACTTGAAAGCCATGCATCTAAGCTTAGTCAGTTTGTGGAAGAAATGCAAATAGTTCACGACAAGAAGTTGGAGGATCTTGAAAGAAAATTTGAGGAATGTGCTGCAAATGAGGAGAAGAAACTCTTGGAGAATTTTGCTAAAATGCTAGCTGCTTCGACAGCTCGAAAATCAGAATTGGTACAGTCTGCAGTGCAAAATCTGCGTGAAAATGCTGTCAATAAAACACATGAGTTGCAACATGGGATGTTGAGTATGCGGCATGATGCATCTGATATTCAAAACCGGTGGAAGTTATACATGAAGCAAGCTGAAAATTTCTATGTGGAGGATACAACATCATTGGCAACAGGGCACAGTTGTATGGAAGAAATTCTTCAGGAATGTATGATGAAAGCGACTGCTGCTGGAGTACAGTGGAGAGGTACACAAGATTCACTACAGAAACTTGAGAGGAGCAATGTTGAAGCTGTTGGTTCTATCATCAAGAGTGGCACTGAGGCAAATCAGCTTCTTCTGGCTAGCTTTACGCAGGCTGCAGCTTCCACCAATGAAGCTGTTAAGACTGGAAATGACAGCTTGTTGTCATCCATTGACAGTTCACTGAAACTCGATCACGATGTGTGCATAAATATACACTCCATAATAACCCCTTGCACCAATGAATTTATAGAGCTACAAAGGAGTCACTATGGCAAGGTGGTAGAGACAACCAACCAAGCAGAAAAATATCTACAAGAGGAATACATGGAAGATGTGCCTTCTTGTACAACACCAAGGAGAAGGCCTATCAGTCTACCAACCATGGCTTCTATAGAGCAGTTACGAACTCCTCCCTTCGATGAATTATTGCAAATATTTCAGGATATCAAATTAGAAAATCGATCAAAACAAGGAAATGGAGAGATAAAGCATCTCATAGTGTCTGAAATTTCATCCATGAGAGACTCCAGAATACCTCTTATAGCCAAAAATTAATTGCATATTCTTTTAGTAGTAATACTACAATTTATTTGATAGAGTTATTCAAAAGTAGCATTGGGTTGGGTCGGGATTGTTTGGCTCTGTAAATTATGTACAGCATACACAGGCACAGGAAACAGAGACGTGTAGCATCAAACAATTATGAATTGGGTCCTTCAGGTCTTTGCCTGTTTTATTCGTTAGTCCTCCTCTTACAGATAGGAAGGAGCAAACATTTGGTTCCCCATTCAAAGTCATCAAAGGTGTAAGCATGTCCATGACTGGACTGTATTACAATGCAAGTCAGTCGT

Ace file of the UniGene sp_v2.0_unigene13689

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	P-loop containing nucleoside triphosphate hydrolase-like protein [Arabidopsis thaliana] ref\|NP_001190017.1\| P-loop containing nucleoside triphosphate hydrolase-like protein [Arabidopsis thaliana] emb\|CAB82809.1\| kinesin-related protein-like [Arabidopsis t	-	-	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	30%
Blast2go	125 kda kinesin-related	-	-	71%

Source	GOs	Term	Type	Identity
Blast2go	nucleotide binding	GO:0000166	Molecular Function	71%
Blast2go	microtubule motor activity	GO:0003777	Molecular Function	71%
Blast2go	plasma membrane	GO:0005886	Cellular Component	71%

Source	InterPros	Term	Type	e value	Identity
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	0.0	-
Sma3	Kinesin, motor domain	IPR001752	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5A9P3

Fln msg: No stop codon before M and low homology subject, your sequence is longer than subject: 606 - 353

Fln protein: MTEKIEQLEVEIDAKNKGIEELQGLYNYQQLLSAEFSNKLEMTQKKLEDTEYALDDLEEKYSQLSCTLKEKEFIISNMLQSEKALVEQACGLRSELENTTQDVSGLFSKIERKDKIETGNKELVQTFRIQLTQQLEVLHKTVEGSVSQQQRQLQTMEDQMQSFVSTKTEATEDLRNRVENLKTIYGSGVRGLHDLANALDENSVSTLGRLNSTISMHASTLENLVGKTVLDAEALLSELHSALSKQEATMALYAQQQREAIQRTIESTRVISKVNTDFFATLESHASKLSQFVEEMQIVHDKKLEDLERKFEECAANEEKKLLENFAKMLAASTARKSELVQSAVQNLRENAVNKTHELQHGMLSMRHDASDIQNRWKLYMKQAENFYVEDTTSLATGHSCMEEILQECMMKATAAGVQWRGTQDSLQKLERSNVEAVGSIIKSGTEANQLLLASFTQAAASTNEAVKTGNDSLLSSIDSSLKLDHDVCINIHSIITPCTNEFIELQRSHYGKVVETTNQAEKYLQEEYMEDVPSCTTPRRRPISLPTMASIEQLRTPPFDELLQIFQDIKLENRSKQGNGEIKHLIVSEISSMRDSRIPLIAKN*

Protein Length: 607

Fln nts: ATGGGAACAAGAGGTCTATGCTGCACGAGAGAAGAATGGCATATATCTTCCACGTGAACGTTTCCTCCTGGATGAAGCTGAAAAAAAGGCT_-_ATGACAGAGAAGATAGAACAGTTGGAGGTAGAAATTGATGCCAAGAACAAGGGAATAGAGGAGTTGCAAGGACTCTACAATTATCAGCAACTTCTGAGTGCAGAATTTAGCAATAAGCTTGAGATGACCCAGAAAAAACTTGAGGATACTGAGTATGCCTTAGATGATCTCGAAGAGAAATACAGTCAGCTGAGCTGTACACTTAAGGAAAAAGAATTCATCATCTCCAACATGTTACAGTCAGAAAAAGCACTGGTTGAGCAGGCATGTGGTCTTCGGTCAGAACTAGAGAACACAACACAAGATGTATCAGGGCTCTTTTCTAAAATTGAGCGTAAGGATAAGATAGAAACTGGAAATAAAGAACTAGTCCAGACATTTCGAATACAGTTAACTCAGCAGCTTGAAGTGTTGCATAAGACTGTTGAAGGTTCTGTGAGCCAACAACAACGGCAGCTACAAACTATGGAAGATCAAATGCAATCCTTTGTCTCCACAAAAACTGAGGCTACAGAAGATCTCAGAAATAGGGTTGAGAATTTGAAGACAATCTATGGCTCTGGAGTCAGGGGCTTACATGATCTAGCCAATGCACTCGATGAAAATTCTGTGTCTACTCTTGGCAGGCTCAACTCAACAATATCCATGCACGCTTCTACTCTTGAGAATCTGGTGGGAAAAACTGTTCTAGATGCAGAGGCATTGCTGAGTGAACTTCATAGTGCTCTGTCCAAGCAAGAGGCCACAATGGCTTTATATGCCCAACAACAGCGGGAGGCAATTCAAAGAACTATAGAGTCCACGAGGGTAATTTCAAAGGTGAACACAGATTTCTTTGCAACACTTGAAAGCCATGCATCTAAGCTTAGTCAGTTTGTGGAAGAAATGCAAATAGTTCACGACAAGAAGTTGGAGGATCTTGAAAGAAAATTTGAGGAATGTGCTGCAAATGAGGAGAAGAAACTCTTGGAGAATTTTGCTAAAATGCTAGCTGCTTCGACAGCTCGAAAATCAGAATTGGTACAGTCTGCAGTGCAAAATCTGCGTGAAAATGCTGTCAATAAAACACATGAGTTGCAACATGGGATGTTGAGTATGCGGCATGATGCATCTGATATTCAAAACCGGTGGAAGTTATACATGAAGCAAGCTGAAAATTTCTATGTGGAGGATACAACATCATTGGCAACAGGGCACAGTTGTATGGAAGAAATTCTTCAGGAATGTATGATGAAAGCGACTGCTGCTGGAGTACAGTGGAGAGGTACACAAGATTCACTACAGAAACTTGAGAGGAGCAATGTTGAAGCTGTTGGTTCTATCATCAAGAGTGGCACTGAGGCAAATCAGCTTCTTCTGGCTAGCTTTACGCAGGCTGCAGCTTCCACCAATGAAGCTGTTAAGACTGGAAATGACAGCTTGTTGTCATCCATTGACAGTTCACTGAAACTCGATCACGATGTGTGCATAAATATACACTCCATAATAACCCCTTGCACCAATGAATTTATAGAGCTACAAAGGAGTCACTATGGCAAGGTGGTAGAGACAACCAACCAAGCAGAAAAATATCTACAAGAGGAATACATGGAAGATGTGCCTTCTTGTACAACACCAAGGAGAAGGCCTATCAGTCTACCAACCATGGCTTCTATAGAGCAGTTACGAACTCCTCCCTTCGATGAATTATTGCAAATATTTCAGGATATCAAATTAGAAAATCGATCAAAACAAGGAAATGGAGAGATAAAGCATCTCATAGTGTCTGAAATTTCATCCATGAGAGACTCCAGAATACCTCTTATAGCCAAAAATTAATTGCATATTCTTTTAGTAGTAATACTACAATTTATTTGATAGAGTTATTCAAAAGTAGCATTGGGTTGGGTCGGGATTGTTTGGCTCTGTAAATTATGTACAGCATACACAGGCACAGGAAACAGAGACGTGTAGCATCAAACAATTATGAATTGGGTCCTTCAGGTCTTTGCCTGTTTTATTCGTTAGTCCTCCTCTTACAGATAGGAAGGAGCAAACATTTGGTTCCCCATTCAAAGTCATCAAAGGTGTAAGCATGTCCATGACTGGACTGTATTACAATGCAAGTCAGTCGT

Fln Alignment:

Contig13689___REAIQRTIESTRVISKVNTDFFATLESHASKLSQFVEEMQIVHDKKLEDLERKFEECAANEEKKLLENFAKMLAASTARKSELVQSAVQNLRENAVNKTHELQHGMLSMRHDASDIQNRWKLYMKQAENFYVEDTTSLATGHSCMEEILQECMMKATAAGVQWRGTQDSLQKLERSNVEAVGSIIKSGTEANQLLLASFTQAAASTNEAVKTGNXXXXXXXXXXXXXXXXVCINIHSIITPCTNEFIELQRSHYGKVVETTNQAEKYLQEEYMEDVPSCTTPRRRPISLPTMASIEQLRTPPFDELLQIFQDIKLENRSKQGNGEIKHL--IVSEISSMRDSRIP
D5A9P3_______________RERARTSIELMTSISGATMGFFENLADQASKFQQHIEHSHEVREQSIIDFQKAYEAQSRQEEQQLINDISNLVANAMVRKADMVNTRLSSLREKVIEDRESMQQGILSIDAATSDAKRKWETFAKQADNDANESAALSAAKHCRMELLLQQCVNITSNASQHWKTTKKTGEDHSRKYVTVMESLVRDGVEANDKHDAEIDDSRVSAEVDIEKNNESILLHVDSSVEHEHKVASEILSTIEAHSHTLEKLQNDHLKRVTHIEEQAEHCFCNEYMEDQPTSTTPSRQSIEIPSRDLIENMRAPPFEALVEEFR----ENNPHDVDLKIYHENGISKESKPRQDSLIP

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
1441	50		50		1.0
1480		50		50	1.0
1550	50		50		1.0
1599			16	83	0.994512
1637	14		85		0.993533
1638	85			14	0.993533
1640	85			14	0.993533
1881	33	66			0.997452
1884			66	33	0.997452
1885	66			33	0.997452
1993	11		88		0.923564
1994	11	88			0.923564
1996		88		11	0.923564
2067	12			87	0.992554
2069	12	87			0.992554
2082		83		16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain