SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene13639

Length: 316 nt

Origin of reads: Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene13639
TTTTTGGAATACACAGTTGCAAAGGAGTTCGCTGACAGCCTCGGCATTCCATTCCTCGAGACCTCCGCTAAGAACGCATCCAATGTTGAGCAAGCTTTCTTGACTATGGCCCGCCAGATCAAGGAGAGAATGGGTACTACCACAGCAAACAACAAGCCTACGGTACAAGTTGGACAAGGCCAAGGTGTGCAATCAGGATCGGCCGGTGGCTGCTGTTAAACATTCTCCTGTCCCATGATCCTGTTGAACGAATGGAACGACTGGTTTTCCTTGCCTCTCTGTGCGCGCATTAGAATGACTGTCATTTGGATCGGCT

Ace file of the UniGene sp_v2.0_unigene13639 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	GTP-binding protein ypt1 n=1 Tax=Aspergillus niger CBS 513.88 RepID=UPI0001F27511	-	-	2.0e-20	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	66%
Blast2go	gtp-binding protein ypt1	-	-	6.79302e-27	95%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein transport	GO:0015031	Biological Process	6.79302e-27	95%
Blast2go	small GTPase mediated signal transduction	GO:0007264	Biological Process	6.79302e-27	95%
Blast2go	GTP binding	GO:0005525	Molecular Function	6.79302e-27	95%

Source	InterPros	Term	Type	Identity
Sma3	Small GTPase superfamily	IPR001806	-	-
Sma3	RNA polymerase sigma factor 54, interaction	IPR002078	-	-
Sma3	Small GTPase superfamily, Rab type	IPR003579	-	-
Sma3	Small GTP-binding protein domain	IPR005225	-	-
Sma3		IPR013753	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NPH9

Fln msg: your sequence is shorter than subject: 73 - 202

Fln protein: FLEYTVAKEFADSLGIPFLETSAKNASNVEQAFLTMARQIKERMGTTTANNKPTVQVGQGQGVQSGSAGGCC*

Protein Length: 74

Fln nts: TTTTTGGAATACACAGTTGCAAAGGAGTTCGCTGACAGCCTCGGCATTCCATTCCTCGAGACCTCCGCTAAGAACGCATCCAATGTTGAGCAAGCTTTCTTGACTATGGCCCGCCAGATCAAGGAGAGAATGGGTACTACCACAGCAAACAACAAGCCTACGGTACAAGTTGGACAAGGCCAAGGTGTGCAATCAGGATCGGCCGGTGGCTGCTGTTAA___ACATTCTCCTGTCCCATGATCCTGTTGAACGAATGGAACGACTGGTTTTCCTTGCCTCTCTGTGCGCGCATTAGAATGACTGTCATTTGGATCGGCT

Fln Alignment:

Contig13639___LEYTVAKEFADSLGIPFLETSAKNASNVEQAFLTMARQIKERMGTTTANN
A9NPH9_______________VDYDTAKAFADEIGIPFLETSAKNATNVEQAFMTMAAEIKNRMASQPAMN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain