SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene13530

Length: 483 nt

Origin of reads: Uma v2

UniGene Fasta

>sp_v2.0_unigene13530
AGAAAACTTGAAATGTCCAGTTCAACTACGCTTAAGTCAACTGGACTGACATCTGAATCCATTTTGGCTTGCACTGAAGGTCAGTCTATCATAGCAAGAAAAGCTGATTTTGTAAGTAAACTGGAAAATAACAGAACAGGTGGAAGTCCCAGAATCTTGTTAGCCGATGATAATAAAGTTAATGTTATGGTTGCAATTTCAATGCTTAAGCGCCTGGGGTTTACAGCAAAGGTGGTCACAAATGGTTTGGAAGCTTTAGAGGCAATAAGGAAGGAAAAATATGACCTTATTCTGCTTGACATTTGCATGCCATTAATGGATGGATTGCAAGTAGCATATGCTGTTCGAAAATTTGAGGAAACAGGACAATGGCCAGATGGAGATCTGTCCAATATGTTCTCAAATTCCCACTCCTGGTCCCTTGATTCAGGAACACTTCATTAAGCCAAGTTCAGATGAACAACATGGATGGATTAGCAAATG

Ace file of the UniGene sp_v2.0_unigene13530

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pseudo response regulator n=2 Tax=Selaginella moellendorffii RepID=D8SNB4_SELML	-	-	1.0e-26	82%
FL-Next	sp=Histidine kinase 5; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	53%
Blast2go	cytokinin receptor 2-like protein	-	-	4.68225e-33	76%

Source	GOs	Term	Type	e value	Identity
Blast2go	negative regulation of abscisic acid mediated signaling pathway	GO:0009788	Biological Process	4.68225e-33	76%
Blast2go	root development	GO:0048364	Biological Process	4.68225e-33	76%
Blast2go	cellular response to nitric oxide	GO:0071732	Biological Process	4.68225e-33	76%
Blast2go	cellular response to molecule of bacterial origin	GO:0071219	Biological Process	4.68225e-33	76%
Blast2go	peptidyl-histidine phosphorylation	GO:0018106	Biological Process	4.68225e-33	76%
Blast2go	cellular response to hydrogen peroxide	GO:0070301	Biological Process	4.68225e-33	76%
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	4.68225e-33	76%
Blast2go	cytokinin mediated signaling pathway	GO:0009736	Biological Process	4.68225e-33	76%
Blast2go	negative regulation of ethylene mediated signaling pathway	GO:0010105	Biological Process	4.68225e-33	76%
Blast2go	two-component sensor activity	GO:0000155	Molecular Function	4.68225e-33	76%
Blast2go	two-component response regulator activity	GO:0000156	Molecular Function	4.68225e-33	76%
Blast2go	receptor activity	GO:0004872	Molecular Function	4.68225e-33	76%
Blast2go	ATP binding	GO:0005524	Molecular Function	4.68225e-33	76%
Blast2go	vacuole	GO:0005773	Cellular Component	4.68225e-33	76%
Blast2go	plasma membrane	GO:0005886	Cellular Component	4.68225e-33	76%
Blast2go	regulation of stomatal closure	GO:0090333	Biological Process	4.68225e-33	76%

Source	InterPros	Term	Type	Identity
Sma3	PAS-associated, C-terminal	IPR000700	-	-
Sma3	PAC motif	IPR001610	-	-
Sma3	Signal transduction response regulator, receiver domain	IPR001789	-	-
Sma3	ATPase-like, ATP-binding domain	IPR003594	-	-
Sma3	Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain	IPR003661	-	-
Sma3	Signal transduction histidine kinase-related protein, C-terminal	IPR004358	-	-
Sma3	Signal transduction histidine kinase, core	IPR005467	-	-
Sma3	PAS fold-4	IPR013656	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q3S4A7

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 33 aas, your sequence is shorter than subject: 148 - 922

Fln protein: RKLEMSSSTTLKSTGLTSESILACTEGQSIIARKADFVSKLENNRTGGSPRILLADDNKVNVMVAISMLKRLGFTAKVVTNGLEALEAIRKEKYDLILLDICMPLMDGLQVAYAVRKFEETGQWPDGDLSNMFSNSHSWSLDSGTLH*

Protein Length: 149

Fln nts: AGAAAACTTGAAATGTCCAGTTCAACTACGCTTAAGTCAACTGGACTGACATCTGAATCCATTTTGGCTTGCACTGAAGGTCAGTCTATCATAGCAAGAAAAGCTGATTTTGTAAGTAAACTGGAAAATAACAGAACAGGTGGAAGTCCCAGAATCTTGTTAGCCGATGATAATAAAGTTAATGTTATGGTTGCAATTTCAATGCTTAAGCGCCTGGGGTTTACAGCAAAGGTGGTCACAAATGGTTTGGAAGCTTTAGAGGCAATAAGGAAGGAAAAATATGACCTTATTCTGCTTGACATTTGCATGCCATTAATGGATGGATTGCAAGTAGCATATGCTGTTCGAAAATTTGAGGAAACAGGACAATGGCCAGATGGAGATCTGTCCAATATGTTCTCAAATTCCCACTCCTGGTCCCTTGATTCAGGAACACTTCATTAAGCCAAGTTCAGATGAACAACATGGATGGATTAGCAAATG

Fln Alignment:

Contig13530___PRILLADDNKVNVMVAISMLKRLGFTAKVVTNGLEALEAIRKEKYDLILLDICMPLMDGLQVAYAVRKFEETGQW
Q3S4A7_______________PKILLVEDNKINIMVAKSMMKQLGHTMDIANNGVEAITAINSSSYDLVLMDVCMPVLDGLKATRLIRSYEETGNW

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain