SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene13388

Length: 3202 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene13388
CGGAGACGGATCGAGGCGAATTAAGCTTCGGAGGACCTCGGCATTACGCGGATCGGCACGGGTTCCAGAGCAATGGCCTCAGCAAATGCCGTAGCGAATACTGGTAAACACAGTAGTTTTACCGTCGGAGGAGGTGGGAATAGTGGGAGAAGCAGAATGCAAGTTCAAAACTCTGAAATTCAACGGAGGCAGTGGATTCCGGACGAGCGGGATAATTTTATGTCATGGCTTAGAGGTGAATTCGCTGCGGCGAATGCTATTATTGACTCATTGTGTCAGCATTTGCGGATCGTAGGTGAACCGGGGGAATATGATTTTGTGCTGAGTGACTATTCAGCAACGTCGCTGTAACTGGACCGTTGTTCTTCATATGCAGCAATATTTTTCGGTTGCAGAGGTCTTGTACGCTATACAGCAAGTCGCTTGGAGAAAGCAGCAGAAGAAATCGGATCATTCAACTGGCACTCAAATCAATCCCGTATCACATGGAAAGGATAATGTATATTCTCCTATAGATAGGCATGGAAGTGTGCGACCTGGAAATGCGAATTTGCCGTCTCAATCTGTAAAGAAGTCAGGGCAGCGAGTTTTGTTGACTCAGAATGGAAGTAAAGATGAAGGATTTGTAAGTGGAGAGGCTTATGCGGGTAAGAGAGAAAATGCAGATGGCAAATAATGAAGCACAATTGTATGACGCGCTCTCTGTAAACTCTGCGTTGCAATCTGGCGAATGCTTTAACAATTTGTCAGGATCTACGACGAGTGAAATTGAGGAAACAAAATCCTCCGCGCCGAGTGAGTTAGCAGAGAAGGGAAAACAAGAAGAGGAGACCAAACGTGAATGCCAAGCGCAGGCAGAGCCAGATATTGGCGGATCAATTACGAGGGGGACGCAAGAAAGGTTGGAAAACAGAGGATCCAATCTGACAGAGAAGCATGAACGTGAAGTGGCAGAATCAAAATTCTCTAGTTCTGAACAAAATGACACCTCACGAAAAGGCAGGAGATCAAAGTTGGCAGAGTCTAATCCTGCAAGACCCAAGGCAATGGATGGTGCCTGCTCAACACATCAGTCAGTTTCAGGTGCTTCAGAGGACATATTGACAAACGTAGATTTTCAGTGTGTTTCAAAACAAGAAGATGACAGGCGGCGGTCTATGATTAGGGTTTCCAAAAATTTTGTTGGTAATGAACTTGTGGAGGGAAAGATGATCAACATTGTTGAAGGCCTAGAGTTATATGAAAACATCTTTGATAGTTCAGAGCTTTCACGGCTTACTCTGTTTACACAGAAACTTAAAGTTGCAGGAAGGCAGAGAGAACTTAGAGGTCAGACGTTTTTGGTTTTCAAGAGACCAATGAAAGGCCATGGGAGAGAAATGATTCAATTTGGTGTTCCTAGTATCGATGCACCATTGGAAGAAGAAATCAAAACAGGAAGAGTAAAAGATTTAGTGGAACCAATTCCAAGAGTGTTGCAAGATGTCATCAATCGCTTATTACAATGGCAAATAATACCTGAAAATACAAGGCCAAATTCTTGTATCATAAATTTCTTTAATGAGGGTGATCATTCACAGCCTCATATCAGTCCACCTCATTTTGCTCGTCCTTTCTGGACAATATCATTACTTTCAGAGTGCACCATGGTGTTTGGACGAGCAATAACAATAAATCATCCTGGTGATTATAAAGGACCTTTAAAACTTTCTCTGCCTTCAGGGTCATTAATAGTTATGCAAGGAAACAGTGCAGATGTATCAAAGTACTCAATTTGTTCTTCTCCCGGACAGAGGGTCACTATTACTTTTGTTAAGGTGCAACCGAAGAAGGGGTCTATTATACCCACAGGCATGTCACGCCCTTTATCCCTGTCAAATTCACATTGGCCACAACCAGCAGCTCGACAGTCAAGTACAAGTGCTTCAGCCACAGTTCCTAGAGGAGTGGGCCAGATGGCTACTAAGCACTATAATATAGTTCCCACATCTGGAGTACTACCTGTTCCTCCAGTCCGTACATCTCAAGTGAATCAACGTCTTCCTGCTCCAAGAATTCAGCCTCTGTTTGCAGGTCCACCAGGACCCCCAGGGGCTTATTCACCTATGGCTGTTATTCCTCAAGTGTGGTCAGCAGTTCCTAGGCCTGCACCAAGAATGCCTGGTTCTGGTACAGGAGTATTTCTTCCATGCAGTGGCTCAGGTAGTGGCTCAGGTCAGGTTGTATCTTTGCTCCAGCAACAGCAAGGAGTACTTGATATTTCCCCTGGGCTACCTATTAACGAACAGTCCTTTACTCTTCCTGCTTCCACAGAGTCTGCTGCAACTTCATGTTCTACTTCAAGATTATCAAAGATGGCAGCAACAAGCCCATTAGCATTTGATAGTCTTGATATGGATTCCGAGAGATTAGATGCAATTCCATCTTCGCAATCTTTCCCTGCTAAGTTTGACTTTGCAGTTCCTAAAACTGCTCCTAATAAAGATATGGTACACAAAAGCCCAAAATCAGATTCTAATGCAAGTAAACTGACTAAGGGTGATCAATGGAATAGAGCCTCGAGTCAGTCAAAGAGAAGTGCAAATAAATTAAACTCAACAAGTGCTGGAGGAAGCAGTTAGATAAAACTCAGTTGACATGTGAACTTCATTCTTGTGTTCTTTGAGTTGTTACCGTTTATTTTTTTCCTCATCTTGAGAAGATGAGGCATGAAAGTCTTCCTCTTCAGTTAGCCTTCTGGAATACAGAAGCTGGATTCGTCTTTGGGAAAAATGATTGATTGATCTCTAACAAAAAGAAGACTTTGTTCATTGAGGCAGTTAAAAATCTTGCCCATCCATTCTCAATTCTTTGAAATTCTTAGTTGGAGCTATGTCTGGCAAAATCTTGCCGGAAAAAATAAAATTCATTTGTTTACTTTGGCATTTCATGGTAGATTTATCCCCAGGGAACTCAATTTTGAATCTACTGTTTTTCTTATTAGTTGAGCAGAAGCCGTGCAACTTTTCAAAAAGCTAACTTTTAGCAGGAAGAATGTACATGGAATGGTCAGTATGAAGTTAAATTGTGTCTTTTTCTGTAATTAACCTCTGTATCATAGAGATTTTTCAATTATTGTACTGTTAGTGGGCCTTCTGTGGAGCAGGGAGAAACTTTGCGAAAGATCATCATCTAATAAAGCAAATGGAGGTATATTATTATG

Ace file of the UniGene sp_v2.0_unigene13388

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Whole genome shotgun sequence of line PN40024, scaffold_11.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D7T8G4_VITVI	-	-	36%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	40%
Blast2go	hydroxyproline-rich glyco protein	-	-	56%

Source	InterPros	Term	Type	e value	Identity
Sma3	Oxoglutarate/iron-dependent oxygenase	IPR005123	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: B8LLT0

Fln msg: Unexpected STOP codon in 5 prime region, your sequence is longer than subject: 660 - 496

Fln protein: MRVREKMQMANNEAQLYDALSVNSALQSGECFNNLSGSTTSEIEETKSSAPSELAEKGKQEEETKRECQAQAEPDIGGSITRGTQERLENRGSNLTEKHEREVAESKFSSSEQNDTSRKGRRSKLAESNPARPKAMDGACSTHQSVSGASEDILTNVDFQCVSKQEDDRRRSMIRVSKNFVGNELVEGKMINIVEGLELYENIFDSSELSRLTLFTQKLKVAGRQRELRGQTFLVFKRPMKGHGREMIQFGVPSIDAPLEEEIKTGRVKDLVEPIPRVLQDVINRLLQWQIIPENTRPNSCIINFFNEGDHSQPHISPPHFARPFWTISLLSECTMVFGRAITINHPGDYKGPLKLSLPSGSLIVMQGNSADVSKYSICSSPGQRVTITFVKVQPKKGSIIPTGMSRPLSLSNSHWPQPAARQSSTSASATVPRGVGQMATKHYNIVPTSGVLPVPPVRTSQVNQRLPAPRIQPLFAGPPGPPGAYSPMAVIPQVWSAVPRPAPRMPGSGTGVFLPCSGSGSGSGQVVSLLQQQQGVLDISPGLPINEQSFTLPASTESAATSCSTSRLSKMAATSPLAFDSLDMDSERLDAIPSSQSFPAKFDFAVPKTAPNKDMVHKSPKSDSNASKLTKGDQWNRASSQSKRSANKLNSTSAGGSS*

Protein Length: 661

Fln nts: CGGAGACGGATCGAGGCGAATTAAGCTTCGGAGGACCTCGGCATTACGCGGATCGGCACGGGTTCCAGAGCAATGGCCTCAGCAAATGCCGTAGCGAATACTGGTAAACACAGTAGTTTTACCGTCGGAGGAGGTGGGAATAGTGGGAGAAGCAGAATGCAAGTTCAAAACTCTGAAATTCAACGGAGGCAGTGGATTCCGGACGAGCGGGATAATTTTATGTCATGGCTTAGAGGTGAATTCGCTGCGGCGAATGCTATTATTGACTCATTGTGTCAGCATTTGCGGATCGTAGGTGAACCGGGGGAATATGATTTTGTGCTGAGTGACTATTCAGCAACGTCGCTGTAACTGGACCGTTGTTCTTCATATGCAGCAATATTTTTCGGTTGCAGAGGTCTTGTACGCTATACAGCAAGTCGCTTGGAGAAAGCAGCAGAAGAAATCGGATCATTCAACTGGCACTCAAATCAATCCCGTATCACATGGAAAGGATAATGTATATTCTCCTATAGATAGGCATGGAAGTGTGCGACCTGGAAATGCGAATTTGCCGTCTCAATCTGTAAAGAAGTCAGGGCAGCGAGTTTTGTTGACTCAGAATGGAAGTAAAGATGAAGGATTTGTAAGTGGAGAGGCTT_-_ATGCGGGTAAGAGAGAAAATGCAGATGGCAAATAATGAAGCACAATTGTATGACGCGCTCTCTGTAAACTCTGCGTTGCAATCTGGCGAATGCTTTAACAATTTGTCAGGATCTACGACGAGTGAAATTGAGGAAACAAAATCCTCCGCGCCGAGTGAGTTAGCAGAGAAGGGAAAACAAGAAGAGGAGACCAAACGTGAATGCCAAGCGCAGGCAGAGCCAGATATTGGCGGATCAATTACGAGGGGGACGCAAGAAAGGTTGGAAAACAGAGGATCCAATCTGACAGAGAAGCATGAACGTGAAGTGGCAGAATCAAAATTCTCTAGTTCTGAACAAAATGACACCTCACGAAAAGGCAGGAGATCAAAGTTGGCAGAGTCTAATCCTGCAAGACCCAAGGCAATGGATGGTGCCTGCTCAACACATCAGTCAGTTTCAGGTGCTTCAGAGGACATATTGACAAACGTAGATTTTCAGTGTGTTTCAAAACAAGAAGATGACAGGCGGCGGTCTATGATTAGGGTTTCCAAAAATTTTGTTGGTAATGAACTTGTGGAGGGAAAGATGATCAACATTGTTGAAGGCCTAGAGTTATATGAAAACATCTTTGATAGTTCAGAGCTTTCACGGCTTACTCTGTTTACACAGAAACTTAAAGTTGCAGGAAGGCAGAGAGAACTTAGAGGTCAGACGTTTTTGGTTTTCAAGAGACCAATGAAAGGCCATGGGAGAGAAATGATTCAATTTGGTGTTCCTAGTATCGATGCACCATTGGAAGAAGAAATCAAAACAGGAAGAGTAAAAGATTTAGTGGAACCAATTCCAAGAGTGTTGCAAGATGTCATCAATCGCTTATTACAATGGCAAATAATACCTGAAAATACAAGGCCAAATTCTTGTATCATAAATTTCTTTAATGAGGGTGATCATTCACAGCCTCATATCAGTCCACCTCATTTTGCTCGTCCTTTCTGGACAATATCATTACTTTCAGAGTGCACCATGGTGTTTGGACGAGCAATAACAATAAATCATCCTGGTGATTATAAAGGACCTTTAAAACTTTCTCTGCCTTCAGGGTCATTAATAGTTATGCAAGGAAACAGTGCAGATGTATCAAAGTACTCAATTTGTTCTTCTCCCGGACAGAGGGTCACTATTACTTTTGTTAAGGTGCAACCGAAGAAGGGGTCTATTATACCCACAGGCATGTCACGCCCTTTATCCCTGTCAAATTCACATTGGCCACAACCAGCAGCTCGACAGTCAAGTACAAGTGCTTCAGCCACAGTTCCTAGAGGAGTGGGCCAGATGGCTACTAAGCACTATAATATAGTTCCCACATCTGGAGTACTACCTGTTCCTCCAGTCCGTACATCTCAAGTGAATCAACGTCTTCCTGCTCCAAGAATTCAGCCTCTGTTTGCAGGTCCACCAGGACCCCCAGGGGCTTATTCACCTATGGCTGTTATTCCTCAAGTGTGGTCAGCAGTTCCTAGGCCTGCACCAAGAATGCCTGGTTCTGGTACAGGAGTATTTCTTCCATGCAGTGGCTCAGGTAGTGGCTCAGGTCAGGTTGTATCTTTGCTCCAGCAACAGCAAGGAGTACTTGATATTTCCCCTGGGCTACCTATTAACGAACAGTCCTTTACTCTTCCTGCTTCCACAGAGTCTGCTGCAACTTCATGTTCTACTTCAAGATTATCAAAGATGGCAGCAACAAGCCCATTAGCATTTGATAGTCTTGATATGGATTCCGAGAGATTAGATGCAATTCCATCTTCGCAATCTTTCCCTGCTAAGTTTGACTTTGCAGTTCCTAAAACTGCTCCTAATAAAGATATGGTACACAAAAGCCCAAAATCAGATTCTAATGCAAGTAAACTGACTAAGGGTGATCAATGGAATAGAGCCTCGAGTCAGTCAAAGAGAAGTGCAAATAAATTAAACTCAACAAGTGCTGGAGGAAGCAGTTAGATAAAACTCAGTTGACATGTGAACTTCATTCTTGTGTTCTTTGAGTTGTTACCGTTTATTTTTTTCCTCATCTTGAGAAGATGAGGCATGAAAGTCTTCCTCTTCAGTTAGCCTTCTGGAATACAGAAGCTGGATTCGTCTTTGGGAAAAATGATTGATTGATCTCTAACAAAAAGAAGACTTTGTTCATTGAGGCAGTTAAAAATCTTGCCCATCCATTCTCAATTCTTTGAAATTCTTAGTTGGAGCTATGTCTGGCAAAATCTTGCCGGAAAAAATAAAATTCATTTGTTTACTTTGGCATTTCATGGTAGATTTATCCCCAGGGAACTCAATTTTGAATCTACTGTTTTTCTTATTAGTTGAGCAGAAGCCGTGCAACTTTTCAAAAAGCTAACTTTTAGCAGGAAGAATGTACATGGAATGGTCAGTATGAAGTTAAATTGTGTCTTTTTCTGTAATTAACCTCTGTATCATAGAGATTTTTCAATTATTGTACTGTTAGTGGGCCTTCTGTGGAGCAGGGAGAAACTTTGCGAAAGATCATCATCTAATAAAGCAAATGGAGGTATATTATTATG

Fln Alignment:

Contig13388___KNFVGNELVEGKMINIVEGLELYENIFDSSELSRLTLFTQKLKVAGRQRELRGQTFLVFKRPMKGHGREMIQFGVPSIDAPLEEEIKTGRVKDL-VEPIPRVLQDVINRLLQWQIIPENTRPNSCIINFFNEGDHSQPHISPPHFARPFWTISLLSECTMVFGRAITINHPGDYXXXXXXXXXXXXXIVMQGNSADVSKYSICSSPGQRVTITFVKVQPKK
B8LLT0_______________KDFVCLERINGKPMNILEGLELHTGVFNAAEQRRLVAFIYQLQEQGRKKQLRERTYSEPRKWMRGKGRITIQFGCCYNYAVDKNGNPPGIVRDEEVDPLPPLFKAAIRRMVRWHVLPPSCIPDSCIVNIYDEGDCIPPHIDHHDFVRPFCTVSLLSECNIIFGSNLKILGPGEFAGSTAIPLPMGSVLILNGNGADVAKHSVPAVPCKRISITFRKMDHSK

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
1109	33	66			0.997452
1340	75			25	0.996473
1367	83		16		0.994512
1383	80	20			0.995493
1385	80			20	0.995493
1869		80		20	0.995493
1930	40		60		1.0
1948		60	40		1.0
2297	40		60		1.0
2314		80		20	0.995493
2396		16		83	0.994512
2425		66		33	1.0
2437		71		28	1.0
2451		14	85		0.993533
2452		85	14		0.993533
2454	85		14		0.993533
2456		14	85		0.993533
2457		14		85	0.993533
2461	85		14		0.993533
2464			14	85	0.993533
2466		14	85		0.993533
2468	85			14	0.993533
2469		14	85		0.993533
2521	83		16		0.994512
2697		88		11	0.923564
2704		11		88	0.923564
2805	80	20			0.999996

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain