SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene13379

Length: 385 nt

Origin of reads: Uma v2

UniGene Fasta

>sp_v2.0_unigene13379
GCCCTCTTCGGCTGTGATAATGGATACTGGTAACTTGGTCGTGCTGAGTGCTGAGAATACCTCTGAAAGTATTTGGCAGAGCTTCGACCACCCAGCTGGAGATACGTGGTTGCCAGGGATGAAGATCAGTACGGGCCAGAAGATAACGTCGTGGAAGAATCCTTGGGATCCAAGTCCGGGGCCTTACGCCCTTCAGATGGATCCAAATGGAGCCGAGGAGTTCGTGCTGACGTGGAAGAATCAGACCATATACTGGGATACGGGCGTCTGGAATGGCAAATATTTTCCCAACACTCCCAATATGACGCCAATTCCCCTCCACAATTACAGCTATTTCAATAACGGTACGTACAAGTATTTCATCTATTCTTATGCAAATCATGGA

Ace file of the UniGene sp_v2.0_unigene13379

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	S-receptor kinase, putative n=1 Tax=Ricinus communis RepID=B9RHL2_RICCO	-	-	3.0e-30	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	37%
Blast2go	s-locus lectin protein kinase family protein	-	-	3.59107e-35	60%

Source	GOs	Term	Type	e value	Identity
Blast2go	cellular process	GO:0009987	Biological Process	3.59107e-35	60%
Blast2go	binding	GO:0005488	Molecular Function	3.59107e-35	60%
Blast2go	kinase activity	GO:0016301	Molecular Function	3.59107e-35	60%
Blast2go	intracellular membrane-bounded organelle	GO:0043231	Cellular Component	3.59107e-35	60%
Blast2go	cytoplasmic part	GO:0044444	Cellular Component	3.59107e-35	60%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	S-locus glycoprotein	IPR000858	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Bulb-type lectin domain	IPR001480	-	-
Sma3	Apple-like	IPR003609	-	-
Sma3	PAN-2 domain	IPR013227	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LRA5

Fln msg: Distance to subject end: 247 aas, your sequence is shorter than subject: 128 - 495

Fln protein: PSSAVIMDTGNLVVLSAENTSESIWQSFDHPAGDTWLPGMKISTGQKITSWKNPWDPSPGPYALQMDPNGAEEFVLTWKNQTIYWDTGVWNGKYFPNTPNMTPIPLHNYSYFNNGTYKYFIYSYANHG

Protein Length: 129

Fln nts: GCCCTCTTCGGCTGTGATAATGGATACTGGTAACTTGGTCGTGCTGAGTGCTGAGAATACCTCTGAAAGTATTTGGCAGAGCTTCGACCACCCAGCTGGAGATACGTGGTTGCCAGGGATGAAGATCAGTACGGGCCAGAAGATAACGTCGTGGAAGAATCCTTGGGATCCAAGTCCGGGGCCTTACGCCCTTCAGATGGATCCAAATGGAGCCGAGGAGTTCGTGCTGACGTGGAAGAATCAGACCATATACTGGGATACGGGCGTCTGGAATGGCAAATATTTTCCCAACACTCCCAATATGACGCCAATTCCCCTCCACAATTACAGCTATTTCAATAACGGTACGTACAAGTATTTCATCTATTCTTATGCAAATCATGGA

Fln Alignment:

Contig13379___IMDTGNLVVLSAENTSESIWQSFDHPAGDTWLPGMKISTGQKITSWKNPWDPSPGPYALQMDPNGAEEFVLTWKNQTIYW
B8LRA5_______________LLDSGNLQLKDQKRIE---WQSFDHPT-DTLLQGQNLSASMKLISAASALDLSEGPYSLEME---VTSMVLSWRSEQVYW

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
99			75	25	0.996473
258	75		25		0.996473
265		75		25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain