SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene13234

Length: 423 nt

Origin of reads: Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene13234
AATTGGACATGCTTATGGATCGCGAGGTTATAAGGAATGAAGCCTTGTTACTTCTGACATACCTAACTCGTGAAGCTGAGGAGATACAAAAAATTGTTGTGTTTGAGGGTGCATTTGAGAAAATATTCAACATCATTAAAGAAGAAGGTGGCTCTGAAGGGGGAATAGTTGTGCAGAAAACAGGATTGCCTTGAGTTGCTAAACAATCTTCTTCGAAACAATCCTACAAATCAGATACTATTGAGAGAAACTATAGGCCTACAGACTGTTGTGTCCCTTTTAAAGCTTCGTAAAGGTAGTGCTGATGGGTTCACACGACAGAAGACAGTGAATTTACTCGGCGCATTGGAGACAGTTGCATTGCTTCTTGCTGGAAGTTCAGATACTGAATATGCAAAGGATGCAAATATAATATCCAATCAA

Ace file of the UniGene sp_v2.0_unigene13234

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Vesicle docking protein P115, putative n=1 Tax=Ricinus communis RepID=B9S666_RICCO	-	-	5.0e-26	75%
FL-Next	sp=Golgin candidate 6; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	89%
Blast2go	protein	-	-	8.97941e-26	95%

Source	GOs	Term	Type	e value	Identity
Blast2go	vesicle fusion with Golgi apparatus	GO:0048280	Biological Process	8.97941e-26	95%
Blast2go	post-embryonic development	GO:0009791	Biological Process	8.97941e-26	95%
Blast2go	protein exit from endoplasmic reticulum	GO:0032527	Biological Process	8.97941e-26	95%
Blast2go	binding	GO:0005488	Molecular Function	8.97941e-26	95%
Blast2go	protein transporter activity	GO:0008565	Molecular Function	8.97941e-26	95%
Blast2go	Golgi membrane	GO:0000139	Cellular Component	8.97941e-26	95%
Blast2go	Golgi stack	GO:0005795	Cellular Component	8.97941e-26	95%
Blast2go	cytosol	GO:0005829	Cellular Component	8.97941e-26	95%
Blast2go	mitochondrion	GO:0005739	Cellular Component	8.97941e-26	95%

Source	InterPros	Term	Type	Identity
Sma3	Vesicle tethering protein Uso1/P115-like , head domain	IPR006953	-	-
Sma3	Uso1/p115-like vesicle tethering protein, C-terminal	IPR006955	-	-
Sma3	Armadillo-like helical	IPR011989	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: B0F9L4

Fln msg: Separated hits, possible frame ERROR between 176 and 181, Distance to subject end: 603 aas, your sequence is shorter than subject: 141 - 914

Fln protein: LDMLMDREVIRNEALLLLTYLTREAEEIQKIVVFEGAFEKIFNIIKEEGGSEGGIVVxxxQDCLELLNNLLRNNPTNQILLRETIGLQTVVSLLKLRKGSADGFTRQKTVNLLGALETVALLLAGSSDTEYAKDANIISNQ

Protein Length: 142

Fln nts: AATTGGACATGCTTATGGATCGCGAGGTTATAAGGAATGAAGCCTTGTTACTTCTGACATACCTAACTCGTGAAGCTGAGGAGATACAAAAAATTGTTGTGTTTGAGGGTGCATTTGAGAAAATATTCAACATCATTAAAGAAGAAGGTGGCTCTGAAGGGGGAATAGTTGTGCAxxxxxxACAGGATTGCCTTGAGTTGCTAAACAATCTTCTTCGAAACAATCCTACAAATCAGATACTATTGAGAGAAACTATAGGCCTACAGACTGTTGTGTCCCTTTTAAAGCTTCGTAAAGGTAGTGCTGATGGGTTCACACGACAGAAGACAGTGAATTTACTCGGCGCATTGGAGACAGTTGCATTGCTTCTTGCTGGAAGTTCAGATACTGAATATGCAAAGGATGCAAATATAATATCCAATCAA

Fln Alignment:

Contig13234___LDMLMDREVIRNEALLLLTYLTREAEEIQKIVVFEGAFEKIFNXXXXXXXXXXXXVVQxxQDCXXXXXXXXXXXXXXQILLRETIGLQTVVSLLKLRKGSADGFTRQKTVNXXXXXXXXXXXXXGSSDTEYAKDANIISNQ
B0F9L4_______________MDMLMDREVIRNEALLLLTHLTREAEEIQKIVVFEGAFEKIFSIIKEEGGSDGDVVVQxxQDCLELLNNLLRSSSSNQILLRETMGFEPIISILKLR-GITYKFTQQKTVNLLSALETINMLIMGRADTEPGKDSNKLANR

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
141	60		40		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain