SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene12994

Length: 1161 nt

Origin of reads: Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene12994

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RecName: Full=B3 domain-containing protein LFL1; AltName: Full=LEC2 and FUSCA3-like protein 1; Short=OsLFL1 gb\|ABO64645.1\| LFL1 [Oryza sativa Japonica Group]	-	-	1.0e-30	44%
FL-Next	tr=Predicted protein; Hordeum vulgare var. distichum (Two-rowed barley).	-	-	0.0	59%
Blast2go	b3 domain-containing protein	-	-	1.39907e-32	73%

Source	GOs	Term	Type	e value	Identity
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	1.39907e-32	73%
Blast2go	DNA binding	GO:0003677	Molecular Function	1.39907e-32	73%
Blast2go	protein binding	GO:0005515	Molecular Function	1.39907e-32	73%
Blast2go	cytosol	GO:0005829	Cellular Component	1.39907e-32	73%
Blast2go	nucleus	GO:0005634	Cellular Component	1.39907e-32	73%

Source	InterPros	Term	Type	e value	Identity
Sma3	B3 DNA binding domain	IPR003340	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: F2EG65

Fln msg: ERROR#3, very serious frame error, Overlapping hits, possible frame ERROR between 549 and 549,

Fln protein: MSRKRRWNFTNPTSLETLTQGFQPDSPLTTWDSFTFTVGTSSAAPATGRQKLHRPNGRHDRGAAAPDDPDCNGKDHKIKNLKFLFQKELRNSDVGSLGRMVLPKKEAEANLPTLTEREGKQLCMEDMYSSKNWNFKYRYWPNNKSRMYVMxxTGEFVKTHGLRLGDFIMFYKDERNEKYIVRAKKVMNELMMTSGNSVDKTMISSSNSVDQSGPYSSPTLLEERSNQQSTSDKENEVSCESPYASGNSVSIEDSKMALVTVEDIFSKEFNIEFPPDIADSVHLESIPSFGSDEISLEDFMN*

Protein Length: 303

Fln nts: GCAGAGCGTTGTTGTGAATAATCATAACATTAACACTCAACCTGCCTAGGATTCGACAGTGCTGCAAATGTTCGGGCTATTCGTAAGAGGCGCAAT_-_ATGAGTAGAAAGCGACGGTGGAATTTCACGAACCCAACATCCCTTGAAACCCTAACACAAGGGTTTCAGCCTGATTCGCCACTAACTACGTGGGATTCTTTCACTTTTACAGTGGGAACGTCTTCTGCTGCCCCTGCTACTGGTCGCCAGAAACTACACAGGCCTAATGGACGCCATGACCGCGGGGCGGCTGCTCCCGATGATCCGGACTGTAATGGAAAGGATCATAAGATTAAGAATCTGAAATTTCTTTTCCAAAAAGAGCTACGGAACAGTGATGTGGGATCTCTAGGAAGAATGGTGCTTCCCAAGAAAGAGGCGGAGGCAAATCTTCCAACACTAACTGAAAGAGAAGGAAAGCAGTTATGCATGGAAGACATGTATTCTTCCAAAAATTGGAACTTCAAGTACAGGTATTGGCCGAACAACAAAAGTCGAATGTATGTCATGxxxxxxACTGGTGAATTTGTCAAAACACATGGTCTTCGACTTGGAGATTTTATTATGTTTTATAAAGATGAGAGGAACGAGAAATATATAGTGAGAGCCAAGAAGGTTATGAATGAACTAATGATGACTTCAGGGAATTCAGTTGATAAAACTATGATATCTTCAAGCAATTCAGTTGATCAAAGTGGCCCTTACTCCTCTCCAACTTTGCTTGAAGAGAGAAGCAATCAGCAATCAACTAGTGACAAAGAGAATGAGGTGAGTTGTGAATCACCATATGCAAGTGGAAATAGTGTCTCTATTGAAGATTCAAAAATGGCCCTGGTTACCGTAGAAGATATATTTTCTAAGGAATTCAACATAGAGTTTCCACCTGATATTGCTGATTCAGTTCATCTGGAATCCATACCTAGTTTTGGCTCGGATGAGATATCCCTGGAAGATTTTATGAACTAG___TTCATAATGAAGGTACTTTAGAACTTTTTGATGTTTATATTTTGTAGCGTTCTACATCACGAAGCTGAATAGTTATAACACTGATACTAATAGTATGAACATTGCCATTATACTATCAGAAGAGATCAGTTCGTTGCAGACTAGTTTAAAATGTCGGGTG

Fln Alignment:

Contig12994___DHKIKNLKFLFQKELRNSDVGSLGRMVLPKKEAEANLPTLTEREGKQLCMEDMYSSKNWNFKYRYWPNNKSRMYVMENTGEFVKTHGLRLGDFIMFYKDERNEKYIVRAKKVMNELM
F2EG65_______________DHQVPGLRVILQKELRNSDISQLGRIVLPKKESEAYLPTLASKDGRSLRMHDLLNAQEWTFKYRYWPNNNSRMYVLENTGDYVRTHNLRVGDFIMIYKDDDNNRFVIRAKKAGDDLV

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
825	14	85			0.993533
872		85	14		0.993533
874		14	85		0.993533
877			14	85	0.993533
881			85	14	0.993533
883	85		14		0.993533
885	85	14			0.993533
886	85			14	0.993533
888	85			14	0.993533
889		14		85	0.993533
892	85	14			0.993533
893	14			85	0.993533
1160		33		66	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain