SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene12855

Length: 1842 nt

Origin of reads: Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene12855

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Lrr receptor protein kinase, putative n=1 Tax=Ricinus communis RepID=B9RBF5_RICCO	-	-	36%
FL-Next	tr=Receptor protein kinase; Pinus sylvestris (Scots pine).	-	-	34%
Blast2go	probable lrr receptor-like serine threonine-protein kinase at2g16250-like	-	-	60%

Source	GOs	Term	Type	Identity
Blast2go	cellular process	GO:0009987	Biological Process	60%
Blast2go	metabolic process	GO:0008152	Biological Process	60%
Blast2go	kinase activity	GO:0016301	Molecular Function	60%
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	60%
Blast2go	plasma membrane	GO:0005886	Cellular Component	60%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Leucine-rich repeat, typical subtype	IPR003591	-	-
Sma3	Aminotransferases, class-I, pyridoxal-phosphate-binding site	IPR004838	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: Q9FEU2

Fln msg: Distance to subject end: 702 aas, your sequence is shorter than subject: 437 - 1145

Fln protein: MVSMARSKCWKWALLLLLPLLMNLGGECSTFHSTPQCVSLAEGGPSQQSVSINRSELSSLFRLRASLGLRSKEWPKKVNPCQVWKGIACREGHVISINLSGFKRTVVGSRNPQFAVDGLQNLTFLETFNASRFLLPGSIPVWFGELSALKTLDLSAASVNGDLPISLGSLHNLNVLMLSQNNITGSIPPTLGQLSSLTTLNLSSNNLTGQIPSTLSNLANLTYLDLSANNLRGPIPDSVGGLSSLTQLKLDNNYFSGVIPSQLGNLSSLNNLDLGSNDLSGPIPSDLGRLINLSNLVLANNLLSGVIPGDIFKCIALRALNLAHNNLSGNLSTSLGSLINLLSLNLSYNNLTQPLPISISSLVNITDINLSHNLFYDSLPSGLARLPHLVAIDLSYNYFEKRIPTFASSTQVVDEENCLQGPAKQRTTFKCTFFYAG

Protein Length: 438

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTTATTGCCATGGAATGGACAAGTCACGAGGGCAGCTGTAAGTCCATTTGGATCGTTGTTTAGGCAATAGCTTGTTCGGCAGTAACTGAGCAACCAATACCCACGAAGTAATATTATGGTTTGTGAAGCGTCAGGAATTGCAACAACATGAATGGCTTCTTGGGGTAATTTTCCGGTAGGTTTGGTTCGCAGGAATGGCCTATGTAGCTTTAAATCTGATGGAAGAAAACCAGGACGATATATTTCTTTCACAACTGGATCAGATTGATTGAGGTTGCTCAAGGCATAAAGGCGCTCTGCAGAGGAACAGATGGCGTTGTGGTCACCAGGTAAACTACTAATGTCTGATCTACCAGCAAAATGCCCACATTTATTGTCATTAGGAGTAGTATTGCAATGGCAGTGGCAGTTGTTATGCGCGATAAACAAGAGTAACAGTGCTGTAAATGCTGCTTTTTAGAGCACATAGGCAGAGTAGGGGATCAGCGGCTTTCCTCCTACTAC_-_ATGGTTTCTATGGCACGTTCAAAATGTTGGAAATGGGCTCTACTGTTATTGTTGCCTCTTTTGATGAATTTGGGAGGTGAATGCAGCACCTTCCATTCGACCCCACAATGTGTTTCGTTGGCAGAAGGAGGCCCTAGCCAACAGTCGGTCTCAATTAACAGGTCAGAGCTAAGTTCTCTTTTCAGGTTGAGGGCTTCCTTGGGATTGAGGAGCAAGGAGTGGCCTAAGAAGGTCAATCCCTGCCAAGTATGGAAAGGGATTGCATGCAGGGAAGGGCATGTTATATCTATAAACTTGTCTGGATTCAAAAGGACAGTAGTAGGGTCACGGAATCCACAATTTGCCGTCGATGGTTTGCAGAATCTTACGTTTCTGGAGACCTTCAATGCTTCTCGCTTTCTCTTGCCTGGCTCCATACCGGTATGGTTTGGCGAACTAAGTGCATTAAAGACTCTGGATCTCAGCGCAGCCTCTGTCAATGGTGATCTTCCTATTTCACTTGGTAGTTTACATAATCTGAATGTTCTAATGCTGTCGCAGAACAATATCACAGGATCCATTCCTCCAACGCTTGGGCAGCTATCCAGTTTGACAACTCTGAATTTGTCATCCAATAATTTGACCGGACAGATACCTAGTACTTTATCGAATTTGGCAAATCTGACTTATCTCGATCTTTCTGCAAATAACTTGCGAGGTCCAATTCCTGACAGTGTTGGAGGTCTGTCAAGTCTGACACAGCTGAAGCTGGACAATAACTATTTCAGTGGTGTGATTCCAAGTCAGTTGGGCAATCTCTCTTCGTTGAATAACCTTGATCTGGGTTCCAATGACCTCTCTGGTCCTATTCCAAGTGATCTGGGGAGACTTATCAATTTGAGTAATTTGGTTCTCGCAAACAATTTACTCAGTGGCGTTATTCCCGGTGACATTTTCAAATGTATTGCACTCCGAGCACTTAATTTGGCTCATAACAATTTGTCTGGAAATTTGTCCACATCTCTTGGTTCACTGATTAACCTGCTTTCTTTAAACCTTTCATACAACAATTTGACACAGCCATTGCCAATTTCCATCTCAAGTTTGGTTAATATCACGGATATCAATCTATCTCATAATCTATTTTATGATTCCTTGCCATCTGGACTTGCAAGGCTCCCTCATTTAGTTGCGATAGATCTGTCATATAACTACTTCGAGAAAAGAATACCTACATTTGCCTCTTCCACACAAGTGGTCGATGAAGAAAACTGTTTACAGGGACCAGCGAAGCAGCGGACGACTTTCAAGTGCACATTTTTCTATGCTGGAA

Fln Alignment:

Contig12855___PKKVNPCQVWKGIACREGH---VISINLSGFKRTVVGSRNPQFAVDGLQNLTFLETFNASRFLLPGSIPVWFGELSALKTLDLSAASVNGDLPISLGSLHNLNVLMLSQNNITGSIPPXXXXXXXXXXXXXXXXXXXXXIPSTLSNLANLTYLDLSAN-NLRGPIPDSVGGLSSLTQLKLDNNYFSGVIPSQXXXXXXXXXXXXXXXXXXXPIPSDLGRXXXXXXXXXXXXXXSGVIPGDIFKCIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTQPLPISISSLVNITDINLSHNLFYDSLPSGLARLPHLVAIDLSYNYFEKRIP----TFASSTQVVDEENCLQGP
Q9FEU2_______________PRHENPCK-WTGVICSLDHENLVTEINIQSVQ--IAGNVPSQFAVLGSLRSLVISAAN-----LTGSIPAEIGGYESLEILDLSGNRLRGNIPAEISKLKNLKSLILNSNQLQGSIPAEIGNCHNLVDLVVFDNQLSGKIPAELGRLANLEVFRAGGNENIEGTLPDELSNCTNLVTLGLAETNISGKIPLSFGSLKKLQTLAIYTAFLSGTIPAELGNCSELVNLYLYENRLSGAIPRELGKLQKLEKLYLWDNELDGSIPAELGSCSSLKFVDLSTNSLSGSIPDSFGSLKNLSELEITDNNVSGSIPAALANCTELTQIQLYNNQISGQMPAELGALKKLTVLFLWQNNLEGP

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
1148	16			83	0.994512
1149		83		16	0.994512
1150		83	16		0.994512
1151	83			16	0.994512
1154	85	14			0.993533
1155	85		14		0.993533
1157			14	85	0.993533
1163			85	14	0.993533
1165	85		14		0.993533
1167	85			14	0.993533
1171	85	14			0.993533
1172	14	85			0.993533
1176		14	85		0.993533
1177	14			85	0.993533
1687	14			85	0.993533
1691	85		14		0.993533
1692	85		14		0.993533

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain