SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene12756

Length: 574 nt

Origin of reads: Uma v2

UniGene Fasta

>sp_v2.0_unigene12756
ACGGAACTTGAGAGCCTCCATGTCTCATCGTTGATTTACCACTGATAGTCAGACTTCGCTGATTCTGTGCCCGTGCATACTATTCTCTTCTTGTCAATTGAAGCTTTGGGCAGAGTATTTCGGTATCGATTGCGAGGCAAAACAAATCGTGCTTCTACTGAAAAAGAAATCAGTGATCAAGATTTCAGTAACAGTATGGTTTGTTTTTCCTCCGCAATTGATACTCACGAATCCTGCCGAGGAGCAACGGCAGAGGATTCATAAGCGAGACGCGGATGAAAACTACCAGGGCTGCTTTTATGGGAGATCGTAAATCAGAACAACTATTTCCCCGTGAAGCAGAACAACAACGGTAGCGTGAAGGTCCGGTTCAGCAATGACACCAATAATATCTGCAATTTGCAGTCGTTCAAGTTTTCAGGTGAACTATATAACTGTCCTTCCTTCTTATTCTTCGGTGGGAGAACCATGCGAGTTTGTTCTTCCTGACCTTGAAAACAGGCCGAATTGCTAACCCACTATAGGTAACTAATGTTACCCAAACTAACGTTACCCAAAGTGTGTTGAGCCTTGG

Ace file of the UniGene sp_v2.0_unigene12756

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	60S ribosomal protein L28 n=4 Tax=Zea mays RepID=B6SQA2_MAIZE	-	-	3.0e-07	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	67%
Blast2go	60s ribosomal protein l28	-	-	3.07526e-12	73%

Source	GOs	Term	Type	e value	Identity
Blast2go	ribosome biogenesis	GO:0042254	Biological Process	3.07526e-12	73%
Blast2go	translation	GO:0006412	Biological Process	3.07526e-12	73%
Blast2go	structural constituent of ribosome	GO:0003735	Molecular Function	3.07526e-12	73%
Blast2go	plasma membrane	GO:0005886	Cellular Component	3.07526e-12	73%
Blast2go	cell wall	GO:0005618	Cellular Component	3.07526e-12	73%
Blast2go	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	3.07526e-12	73%
Blast2go	chloroplast	GO:0009507	Cellular Component	3.07526e-12	73%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5ABZ5

Fln msg: query STOP codon is far from subject stop. Distance to subject end: 26 aas, W1: There is no M at the beginning,

Fln protein: FTTDSQTSLILCPCILFSSCQLKLWAEYFGIDCEAKQIVLLLKKKSVIKISVTVWFVFPPQLILTNPAEEQRQRIHKRDADENYQGCFYGRS*

Protein Length: 94

Fln nts: ACGGAACTTGAGAGCCTCCATGTCTCATCGTTGATTTACCACTGATAGTCAGACTTCGCTGATTCTGTGCCCGTGCATACTATTCTCTTCTTGTCAATTGAAGCTTTGGGCAGAGTATTTCGGTATCGATTGCGAGGCAAAACAAATCGTGCTTCTACTGAAAAAGAAATCAGTGATCAAGATTTCAGTAACAGTATGGTTTGTTTTTCCTCCGCAATTGATACTCACGAATCCTGCCGAGGAGCAACGGCAGAGGATTCATAAGCGAGACGCGGATGAAAACTACCAGGGCTGCTTTTATGGGAGATCGTAA___ATCAGAACAACTATTTCCCCGTGAAGCAGAACAACAACGGTAGCGTGAAGGTCCGGTTCAGCAATGACACCAATAATATCTGCAATTTGCAGTCGTTCAAGTTTTCAGGTGAACTATATAACTGTCCTTCCTTCTTATTCTTCGGTGGGAGAACCATGCGAGTTTGTTCTTCCTGACCTTGAAAACAGGCCGAATTGCTAACCCACTATAGGTAACTAATGTTACCCAAACTAACGTTACCCAAAGTGTGTTGAGCCTTGG

Fln Alignment:

Contig12756___ILFSSCQLKLWAEYFGIDCEAKQXXXXXXXXXXXXXXXTVWFVFPPQLILTNPAEEQRQ
D5ABZ5_______________ILFFSCQLKLSVEDFGIDCEAKQIMLLLGSSTIKISV-TAWFVFPPQLILTNPAEEHQK

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
77	50			50	1.0
85		50	50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain