SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene12234

Length: 446 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1

UniGene Fasta

>sp_v2.0_unigene12234
TCTACAAAGTAAATGAGAAATCTGAGTTTGTTGATCACAGCTTCTTTTACAATGATGCAGTCAACAATGAAGAGTTCATCTTGGAAGACTTTAAAAGATGGATGGATAGCTCTTCCTTCTCATTCTGCAACTATCCATTTGTTTATGATACAGATAGCAAAAGTAAAATTATGCAGTGGGAATCAAACATTCAGATGCGCAATGAGTTTCAAGAAGCCTTACTACGTTCTCTTTTGCTCAAGAGAACCTGCCCTTACTTGGTGCTTAGGGTAAAAAGAGAAAATCTAATTAGGGAAACTATATTACAGATTCAGCTCCAGGCCGAGGATCTTAAGAAGCCATTAAAGGTTCAATTTATAGGAGAAGAAGGGATTGATGAAGGTGGTGTACAAAAGGAGTTTTTCCAATTACTCGTGAGAGATATTTTCGACCCAAAGTATGGCATG

Ace file of the UniGene sp_v2.0_unigene12234

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	HECT E3 ubiquitin ligase, putative n=1 Tax=Phytophthora infestans T30-4 RepID=D0NZ85_PHYIT	-	-	3.0e-28	45%
FL-Next	sp=E3 ubiquitin-protein ligase UPL2; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	45%
Blast2go	hect e3 ubiquitin ligase	-	-	0.0	64%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ligases, Forming carbon-nitrogen bonds, Acid--D-amino-acid ligases (peptide synthases).	EC:6.3.2.-	-	0.0	64%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Tryptophan metabolism	00380		0.0	64%
Blast2go	Biosynthesis of siderophore group nonribosomal peptides	01053		0.0	64%

Source	GOs	Term	Type	Identity
Blast2go	protein modification process	GO:0006464	Biological Process	64%
Blast2go	acid-amino acid ligase activity	GO:0016881	Molecular Function	64%
Blast2go	intracellular	GO:0005622	Cellular Component	64%

Source	InterPros	Term	Type	e value	Identity
Sma3	HECT	IPR000569	-	0.0	-
Sma3	Sugar transporter, conserved site	IPR005829	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q8H0T4

Fln msg: Distance to subject end: 299 aas, your sequence is shorter than subject: 148 - 3658

Fln protein: YKVNEKSEFVDHSFFYNDAVNNEEFILEDFKRWMDSSSFSFCNYPFVYDTDSKSKIMQWESNIQMRNEFQEALLRSLLLKRTCPYLVLRVKRENLIRETILQIQLQAEDLKKPLKVQFIGEEGIDEGGVQKEFFQLLVRDIFDPKYGM

Protein Length: 149

Fln nts: TCTACAAAGTAAATGAGAAATCTGAGTTTGTTGATCACAGCTTCTTTTACAATGATGCAGTCAACAATGAAGAGTTCATCTTGGAAGACTTTAAAAGATGGATGGATAGCTCTTCCTTCTCATTCTGCAACTATCCATTTGTTTATGATACAGATAGCAAAAGTAAAATTATGCAGTGGGAATCAAACATTCAGATGCGCAATGAGTTTCAAGAAGCCTTACTACGTTCTCTTTTGCTCAAGAGAACCTGCCCTTACTTGGTGCTTAGGGTAAAAAGAGAAAATCTAATTAGGGAAACTATATTACAGATTCAGCTCCAGGCCGAGGATCTTAAGAAGCCATTAAAGGTTCAATTTATAGGAGAAGAAGGGATTGATGAAGGTGGTGTACAAAAGGAGTTTTTCCAATTACTCGTGAGAGATATTTTCGACCCAAAGTATGGCATG

Fln Alignment:

Contig12234___LVLRVKRENLIRETILQIQLQA-EDLKKPLKVQFIGEEGIDEGGVQKEFFQLLVRDIFD
Q8H0T4_______________LRISVRRAYVLEDSYNQLRMRSPQDLKGRLNVQFQGEEGIDAGGLTREWYQLLSRVIFD

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
381	80	20			0.995493
382	20		80		0.995493
383			80	20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain