SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene12177

Length: 434 nt

Origin of reads: Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene12177
ACTCTGAAGCTCACGTTGCTGATGTCATGGTAGACGGGGTTTTTCTTCATGACACCACAAATGGGCTCCGGATCAAGACTTGGCAGGGTGGCTCTGGCTACTGTCAAGGGATAAGATACCAAAATGTGCGCATGGAAAATGTTTCATATCCTATAATTATAGACCAGTATTACTGTGATTCTCCAACAACATGTGAAAACCAGACATCAGCAGTTGAAGTGAGTGAAGTTTGGTACGATAGTATTAGTGGAACATCGGCGACAGAGGAAGCAATTAGATTTGCGTGCAGTGACAGCGTGCCATGCGAGAACATCTTGTTGAAAGATATCGACCTTACATTGAATTCAGGAGATGCTGCAGTTTCATTTTGTGAAAGCGCTATAGGTTTCAGCATTGGATCTGTGACTCCACCTCCCTGTTTGAAGATTATGCAC

Ace file of the UniGene sp_v2.0_unigene12177 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	polygalacturonase [Citrus sinensis]	-	-	3.00004e-41	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	65%
Blast2go	polygalacturonase	-	-	0.0	74%

Source	ECs	Term	Type	e value	Identity
Blast2go	Polygalacturonase.	EC:3.2.1.15	-	0.0	74%

Source	KEGGs	Term	Identity
Blast2go	Pentose and glucuronate interconversions	00040	74%
Blast2go	Starch and sucrose metabolism	00500	74%
Blast2go	Metabolic pathways	01100	74%

Source	GOs	Term	Type	Identity
Blast2go	carbohydrate metabolic process	GO:0005975	Biological Process	74%
Blast2go	polygalacturonase activity	GO:0004650	Molecular Function	74%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	74%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S26A, signal peptidase I	IPR000223	-	-
Sma3	Ribosome-binding factor A	IPR000238	-	-
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Glycoside hydrolase, family 28	IPR000743	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Parallel beta-helix repeat	IPR006626	-	-
Sma3	Peptidase S24/S26A/S26B/S26C, beta-ribbon domain	IPR011056	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Pectin lyase fold	IPR012334	-	-
Sma3	Peptidase S24/S26A/S26B	IPR019759	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQX9

Fln msg: Distance to subject end: 31 aas, your sequence is shorter than subject: 144 - 493

Fln protein: SEAHVADVMVDGVFLHDTTNGLRIKTWQGGSGYCQGIRYQNVRMENVSYPIIIDQYYCDSPTTCENQTSAVEVSEVWYDSISGTSATEEAIRFACSDSVPCENILLKDIDLTLNSGDAAVSFCESAIGFSIGSVTPPPCLKIMH

Protein Length: 145

Fln nts: ACTCTGAAGCTCACGTTGCTGATGTCATGGTAGACGGGGTTTTTCTTCATGACACCACAAATGGGCTCCGGATCAAGACTTGGCAGGGTGGCTCTGGCTACTGTCAAGGGATAAGATACCAAAATGTGCGCATGGAAAATGTTTCATATCCTATAATTATAGACCAGTATTACTGTGATTCTCCAACAACATGTGAAAACCAGACATCAGCAGTTGAAGTGAGTGAAGTTTGGTACGATAGTATTAGTGGAACATCGGCGACAGAGGAAGCAATTAGATTTGCGTGCAGTGACAGCGTGCCATGCGAGAACATCTTGTTGAAAGATATCGACCTTACATTGAATTCAGGAGATGCTGCAGTTTCATTTTGTGAAAGCGCTATAGGTTTCAGCATTGGATCTGTGACTCCACCTCCCTGTTTGAAGATTATGCAC

Fln Alignment:

Contig12177___SEAHVADVMVDGVFLHDTTNGLRIKTWQGGSGYCQGIRYQNVRMENVSYPIIIDQYYCDSPTTCENQTSAVEVSEVWYDSISGTSATEEAIRFACSDSVPCENILLKDIDLTLNSGDAAVSFCESAIGFSIGSVTPPPCLK
B8LQX9_______________AKARVADVMVHGAFLHNTTNGLRIKTWQGSSGSARRILFQNVHMENVKHPIIIDQYYCDSKKPCSNKTSAVKVSEVAYLNIKGTSASKEVMRFACSQTVPCENILLADIDLTATSGCTPTTYCENAIGCTTGSVSPHSCLQ

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
176		66		33	1.0
182			33	66	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain