SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene12082

Length: 1022 nt

Origin of reads: Biogeco3 v1 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene12082

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Copper-transporting atpase p-type, putative n=1 Tax=Ricinus communis RepID=B9RC99_RICCO	-	-	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	36%
Blast2go	heavy metal p-type atpase	-	-	72%

Source	ECs	Term	Type	e value	Identity
Blast2go	Copper-exporting ATPase.	EC:3.6.3.4	-	0.0	72%

Source	GOs	Term	Type	Identity
Blast2go	ATP biosynthetic process	GO:0006754	Biological Process	72%
Blast2go	copper ion export	GO:0060003	Biological Process	72%
Blast2go	detoxification of copper ion	GO:0010273	Biological Process	72%
Blast2go	copper ion binding	GO:0005507	Molecular Function	72%
Blast2go	copper-exporting ATPase activity	GO:0004008	Molecular Function	72%
Blast2go	ATP binding	GO:0005524	Molecular Function	72%
Blast2go	integral to membrane	GO:0016021	Cellular Component	72%
Blast2go	plastid	GO:0009536	Cellular Component	72%

Source	InterPros	Term	Type	Identity
Sma3	Flagellar motor protein MotA, conserved site	IPR000540	-	-
Sma3	ATPase, P type cation-transporter	IPR000579	-	-
Sma3	ATPase, P-type, H+ transporting proton pump	IPR000695	-	-
Sma3		IPR001756	-	-
Sma3	ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter	IPR001757	-	-
Sma3		IPR001877	-	-
Sma3	Haloacid dehalogenase-like hydrolase	IPR005834	-	-
Sma3	Heavy metal-associated domain, HMA	IPR006121	-	-
Sma3	Heavy metal-associated domain, copper ion-binding	IPR006122	-	-
Sma3	ATPase, P type, cation/copper-transporter	IPR006403	-	-
Sma3	ATPase, P-type, heavy metal translocating	IPR006416	-	-
Sma3	ATPase, P-type, ATPase-associated domain	IPR008250	-	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	-
Sma3	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	-
Sma3	Heavy-metal-associated, conserved site	IPR017969	-	-
Sma3	Glycoside hydrolase, family 1, active site	IPR018120	-	-
Sma3	ATPase, P-type phosphorylation site	IPR018303	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQ20

Fln msg: Separated hits, possible frame ERROR between 508 and 729, Distance to subject end: 569 aas, your sequence is shorter than subject: 341 - 998

Fln protein: FHPASLNDGEIGNAIADAGFAATLQDDDINERSTKICRLRITGMTCTACSSSVETALEKLAGVQKCSVALTTEEAEIHYDVKQISCAQLIDAVEEMGFLAELINTGEDRDKVNLNLQGVHSTEAVKTVELSLQALPGVKSVEISPNGDKVAVWYDPDLTGPRCFIETIxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGALLRWILCTPVQFIIGWQFYVGAYKSLRHGSANMDVLVALGTNAAYFYSFYSLVRAATSKTFKGTDFFETSAMLISFILLGKLLKVLAKGKTSEAIA

Protein Length: 342

Fln nts: CTTTCATCCCGCATCATTGAATGATGGGGAAATCGGAAACGCCATAGCAGATGCAGGCTTTGCAGCCACATTGCAGGATGATGACATCAATGAGAGGTCTACAAAGATCTGTCGTCTTCGCATTACAGGAATGACTTGCACAGCTTGTTCTTCGTCAGTAGAAACGGCACTGGAAAAGTTGGCAGGAGTCCAGAAATGCTCTGTGGCATTAACAACAGAAGAAGCGGAAATACATTATGACGTTAAACAGATTAGCTGCGCACAGTTAATAGACGCAGTTGAAGAGATGGGTTTCTTAGCTGAATTGATAAACACAGGGGAGGACAGGGACAAAGTGAACTTAAACCTTCAGGGAGTCCATTCTACTGAAGCGGTAAAGACCGTTGAGCTTTCTTTGCAAGCATTACCTGGGGTAAAGTCGGTGGAAATCAGCCCAAATGGAGATAAGGTTGCAGTATGGTATGACCCTGACCTTACAGGACCAAGATGTTTTATAGAAACAATTGAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAGGGGCGCTGTTGAGATGGATTTTGTGTACACCTGTACAATTCATAATTGGATGGCAATTTTACGTTGGTGCTTATAAATCCCTGAGACATGGATCGGCTAATATGGATGTTTTGGTAGCCCTAGGGACAAATGCAGCTTATTTTTATTCATTTTATTCGCTGGTTAGAGCTGCAACTTCAAAGACCTTTAAAGGTACAGACTTCTTTGAGACAAGTGCGATGCTAATCTCCTTCATTCTTCTAGGaAAGTTGCTGAAAGTTTTAGCCAAAGGCAAGACTTCAGAAGCCATTGCA

Fln Alignment:

Contig12082___FHPASLNDGEIGNAIADAGFAATLQDDDINERS----TKICRLRITGMTCTACSSSVETALEKLAGVQKCSVALTTEEAEIHYDVKQISCAQLIDAVEEMGFLAELINTGEDRDKVNLNLQGVHSTEAVKTVELSLQALPGVKSVEISPNGDKVAVWYDPDLTGPRCFIETIDxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGALLRWILCTPVQFIIGWQFYVGAYKSLRHGSANMDVLVALGTNAAYFYSFYSLVRAATSKTFKGTDFFETSAMLISFIXXXXXXXXXXXXXTSEAI
B8LQ20_______________YDPSKVKEEDIKEAIEDAGFDAEVLPK-ISSRSKDQGTVTGKFRIGGMTCAACVNSVEGILRNLPGVTRAVVALATSMGEVEYDPNQMGKVEIINAIEDAGFDAELIQSGQ-QDILSIMIEGLFSEEDAKFVEDMLHNMKGVRDFVVDPLLAKYDILFDPEVIGLRSIIDAIExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGDWLKWALVSPVQFIIGKRFYVAAYRALRNGSANMDVLIALGTSAAYFYSVCALIYGAVFH-YRLATYFETSAMLITFVLLGKYLEVVAKGKTSNAI

SNPs (tot: 4)

Position	A %	C %	G %	Probability
96	25		75	0.996473
97	25		75	0.996473
99		75	25	0.996473
169	75		25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain