SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene12011

Length: 478 nt

Origin of reads: Biogeco3 v1

UniGene Fasta

>sp_v2.0_unigene12011
CTCTCGCATGCAATTCTTTATAATCTTTATGATAATCAGTTTTGCTTACTATGTATTGCCGGGATACCTAATCACAATCTTGAGCTTTTTTTCATGGATTTGCTGGATAAGTCCACACAGTGTCACAGCACACCAAATTGGTTCAGGTCTTCACGGTTTGGGTATAGGGGCTGCAACTCTTGATTGGGCAGGAGTTTCATCATATCTTGGAAGTCCACTTGTCACCCCTTGGTTTTCCATAGTTAACATTGGCATTGGCTTTTTCCTATTTATTTATGTTTTCATTCCACTGTCATATTGGAAATTTGATATCTATAATGCAAGGAGGTTTCCAATTTTCTCAAGTCAACTATTCACAGACACTGGTCAGAAATACAATACAACACAGATTCTCACACCAGAGTTTGACTTGAACATTGAGGCTTATGATAAATACAGCAAACTGTATCTTAGCACATTTTTTGCTTTCTCCACTGGA

Ace file of the UniGene sp_v2.0_unigene12011

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	oligopeptide transporter OPT family protein [Musa acuminata]	-	-	63%
FL-Next	sp=Oligopeptide transporter 3; Arabidopsis thaliana (Mouse-ear cress).	-	-	63%
Blast2go	oligopeptide transporter opt family	-	-	82%

Source	GOs	Term	Type	Identity
Blast2go	oligopeptide transport	GO:0006857	Biological Process	82%
Blast2go	transmembrane transport	GO:0055085	Biological Process	82%
Blast2go	cellular metal ion homeostasis	GO:0006875	Biological Process	82%
Blast2go	oligopeptide transporter activity	GO:0015198	Molecular Function	82%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	82%
Blast2go	membrane	GO:0016020	Cellular Component	82%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Tetrapeptide transporter, OPT1/isp4	IPR004648	-	-
Sma3	Oligopeptide transporter OPT superfamily	IPR004813	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-
Sma3	Deoxyribonuclease, TatD-related, conserved site	IPR018228	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: O23482

Fln msg: Distance to subject end: 369 aas, your sequence is shorter than subject: 159 - 737

Fln protein: SRMQFFIIFMIISFAYYVLPGYLITILSFFSWICWISPHSVTAHQIGSGLHGLGIGAATLDWAGVSSYLGSPLVTPWFSIVNIGIGFFLFIYVFIPLSYWKFDIYNARRFPIFSSQLFTDTGQKYNTTQILTPEFDLNIEAYDKYSKLYLSTFFAFSTG

Protein Length: 160

Fln nts: CTCTCGCATGCAATTCTTTATAATCTTTATGATAATCAGTTTTGCTTACTATGTATTGCCGGGATACCTAATCACAATCTTGAGCTTTTTTTCATGGATTTGCTGGATAAGTCCACACAGTGTCACAGCACACCAAATTGGTTCAGGTCTTCACGGTTTGGGTATAGGGGCTGCAACTCTTGATTGGGCAGGAGTTTCATCATATCTTGGAAGTCCACTTGTCACCCCTTGGTTTTCCATAGTTAACATTGGCATTGGCTTTTTCCTATTTATTTATGTTTTCATTCCACTGTCATATTGGAAATTTGATATCTATAATGCAAGGAGGTTTCCAATTTTCTCAAGTCAACTATTCACAGACACTGGTCAGAAATACAATACAACACAGATTCTCACACCAGAGTTTGACTTGAACATTGAGGCTTATGATAAATACAGCAAACTGTATCTTAGCACATTTTTTGCTTTCTCCACTGGA

Fln Alignment:

Contig12011___SRMQXXXXXXXXXXAYYVLPGYLITILSFFSWICWISPHSVTAHQIGSGLHGLGIGAATLDWAGVSSYLGSPLVTPWFSIVNIGIGFFLFIYVFIPLSYWKFDIYNARRFPIFSSQLFTDTGQKYNTTQILTPEFDLNIEAYDKYSKLYLSTFFAFSTG
O23482_______________TRMKFFLVALGASFIYYALPGYLFPILTFFSWVCWAWPNSITAQQVGSGYHGLGVGAFTLDWAGISAYHGSPLVAPWSSILNVGVGFIMFIYIIVPVCYWKFNTFDARKFPIFSNQLFTTSGQKYDTTKILTPQFDLDIGAYNNYGKLYLSPLFALSIG

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
214			80	20	0.995493
279	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain