SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene11985

Length: 613 nt

Origin of reads: Biogeco3 v1

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene11985

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	SEC7-like guanine nucleotide exchange protein [Arabidopsis thaliana] gb\|AAF76474.1\|AC020622_8 Contains similarity to a guanine nucleotide exchange factor from Homo sapiens gb\|AF111162 and contains a Sec7 PF\|01369 domain [Arabidopsis thaliana] gb\|AEE27360.	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	76%
Blast2go	brefeldin a-inhibited guanine nucleotide-exchange protein 1-like	-	-	85%

Source	GOs	Term	Type	Identity
Blast2go	regulation of ARF protein signal transduction	GO:0032012	Biological Process	85%
Blast2go	megagametogenesis	GO:0009561	Biological Process	85%
Blast2go	binding	GO:0005488	Molecular Function	85%
Blast2go	ARF guanyl-nucleotide exchange factor activity	GO:0005086	Molecular Function	85%
Blast2go	nucleus	GO:0005634	Cellular Component	85%
Blast2go	cytosol	GO:0005829	Cellular Component	85%

Source	InterPros	Term	Type	Identity
Sma3	SEC7-like	IPR000904	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Domain of unknown function DUF1981, SEC7 associated	IPR015403	-	-

Full-Lengther Next Prediction

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
319		60		40	1.0
320	60		40		1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain