SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene11909

Length: 1412 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene11909

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9SQC8_RICCO	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	31%
Blast2go	pentatricopeptide repeat-containing protein	-	-	73%

Source	GOs	Term	Type	e value	Identity
Blast2go	binding	GO:0005488	Molecular Function	0.0	73%

Source	InterPros	Term	Type	e value	Identity
Sma3	Pentatricopeptide repeat	IPR002885	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LN20

Fln msg:

Fln protein: FPDTVTYTMLISNFGKLGDVDSAIKLFEEMKENGLQPSAKIYTILVGSVFKSNRCREALRLFQEMKDTRCTPNVFTYTEVINGLGKAGRVQEAYRIFQDMQKDGCSPDVVMFNKLIDIMGDAGLLDDALKLFGQMETVGCNPTVVTYNSVMEALFKSNNPSEALHWFERMNGKGIAPSSFTYSILIAGLCKVNRLEKALILLEEMDEKGFPPCPAAYCSLIDALGKARRYDAAVELFKEMKENGTPSSSRLYAVMIKHLGKAGRIDAAIKLFEEMQSQGCIPDVYSYNALMSGLVRAGMVDEAHSWLKRMQDQGCKPDISSHNIVLNGLSKAGGPTEAFKMFEKMKISGIQPDAVSYNTVLGALSNAGMFDEAVKLMKEMTSKGFSYNLITYSSILEAMGRVDEDCKPFIQ*

Protein Length: 413

Fln nts: GTTTTCCCGATACGGTCACTTATACTATGCTCATCTCCAACTTTGGGAAACTTGGAGATGTGGACTCTGCGATTAAGCTTTTTGAAGAAATGAAGGAGAATGGTCTGCAACCTAGTGCGAAGATCTATACGATCCTGGTTGGGAGTGTGTTTAAATCAAACAGATGCAGAGAGGCCTTGAGGTTGTTCCAGGAAATGAAGGATACACGTTGTACACCGAATGTGTTTACATACACTGAAGTAATAAATGGGCTAGGCAAAGCAGGGAGAGTCCAAGAGGCATACAGAATATTTCAAGATATGCAGAAAGATGGTTGCTCTCCCGATGTGGTCATGTTCAACAAACTGATCGATATCATGGGTGATGCAGGCCTACTTGATGATGCTCTGAAGCTATTTGGACAGATGGAAACTGTAGGATGCAATCCTACTGTGGTAACATATAACAGTGTCATGGAAGCTCTTTTCAAATCTAACAATCCATCGGAGGCGTTGCATTGGTTTGAGAGAATGAATGGAAAAGGCATTGCTCCAAGTTCGTTTACATATTCCATTCTAATTGCTGGTTTATGCAAGGTGAACAGATTGGAAAAGGCATTGATACTTCTTGAAGAGATGGACGAGAAGGGCTTTCCGCCTTGCCCTGCTGCCTATTGTAGTTTGATTGATGCACTTGGTAAGGCACGCCGTTATGATGCGGCAGTGGAATTATTTAAGGAAATGAAAGAAAATGGCACTCCTTCCAGCTCAAGGCTCTATGCAGTGATGATTAAACACCTTGGTAAAGCAGGGCGTATTGATGCAGCCATTAAACTGTTTGAAGAAATGCAAAGTCAGGGATGTATTCCTGATGTGTATTCCTACAATGCATTAATGTCTGGCCTGGTAAGGGCAGGCATGGTTGATGAAGCTCATTCATGGCTTAAAAGAATGCAAGATCAAGGATGTAAACCTGATATTAGTAGCCATAATATAGTTTTGAATGGTTTGTCTAAGGCAGGTGGGCCAACTGAGGCCTTTAAGATGTTCGAGAAAATGAAAATTTCGGGGATTCAGCCAGATGCAGTATCTTACAACACAGTTCTTGGTGCACTTAGCAATGCGGGCATGTTTGATGAAGCAGTCAAATTAATGAAGGAAATGACTTCTAAAGGATTTTCGTATAATTTGATTACATATTCTTCAATATTAGAGGCTATGGGCAGAGTTGATGAAGACTGCAAACCATTCATTCAATAA___GGAGGTCTTTTGATTCTCCTGTGCTTCCTGGTCGATAGTGATGGTTGCATTCATGGCTTGGCTTTCTGGTTTCAGTGGGGATGATGGATTTCCTGAACCTCACGCAAAATGAGAGTTGCCTTGCCACTGTTTCATATGTCTGGAATATTACCATTTGTAATTTCTTTATCATCT

Fln Alignment:

Contig11909___FPDTVTYTMLISNFGKLGDVDSAIKLFEEMKENGLQPSAKIYTILVGSVFKSNRCREALRLFQEMKDTRCTPNVFTYTEVINGLGKAGRVQEAYRIFQDMQKDGCSPDVVMFNKXXXXXXXXXXXXXXXKLFGQMETVGCNPTVVTYNSVMEALF
B8LN20_______________FPNNATYTALIHGLCQKGSFLEAAVLLNEMVAIGCELDVVIYNSLIDGLCKMGELDFAREMQILMVEKGVAPDVFTYTSLIQGLCDAGLLDEALGLMQEMRAKGIVPNSVTYTTLINGFTQADRTDHALQLVNEMKSNGLMPAGDIYKILFKSLY

SNPs (tot: 62)

Position	A %	C %	G %	T %	Probability
507	75		25		0.996473
523	80			20	0.995493
524		20	80		0.995493
525			80	20	0.995493
527	80			20	0.995493
529			20	80	0.995493
539	25			75	0.996473
541	25		75		0.996473
604	80		20		0.995493
632			20	80	0.995493
634		20		80	0.995493
635		80	20		0.995493
636		80		20	0.995493
644		80	20		0.995493
646		60		20	0.99255
649		20	80		0.995493
653		20	80		0.995493
694	20		80		0.995493
696			20	80	0.995493
697	80		20		0.995493
698			20	80	0.995493
708		20	80		0.995493
881		20		80	0.995493
884	16	83			0.994512
885	16		16		0.988813
888	16		66	16	0.988813
892			83	16	0.994512
894			16	83	0.994512
895	80	20			0.995493
896	80			20	0.995493
898			80	20	0.995493
902		20	80		0.995493
903			80	20	0.995493
961	25			75	0.996473
965	75	25			0.996473
966			25	75	0.996473
968	75	25			0.996473
971	75		25		0.996473
972	25		75		0.996473
975	75			25	0.996473
977	75		25		0.996473
978	75		25		0.996473
981	75		25		0.996473
983	75	25			0.996473
984	25		75		0.996473
985		25		75	0.996473
987		25		75	0.996473
988	25			75	0.996473
1026			16	83	0.994512
1028		16		83	0.994512
1029	83		16		0.994512
1030	83			16	0.994512
1033		16		83	0.994512
1034		16	83		0.994512
1037		83	16		0.994512
1039	83	16			0.994512
1040		16	83		0.994512
1041	83			16	0.994512
1042	83	16			0.994512
1044	83	16			0.994512
1046		16	83		0.994512
1051	33			66	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain