SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene11834

Length: 1106 nt

Origin of reads: Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene11834

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Phosphate transporter n=3 Tax=Glycine max RepID=C0LZ80_SOYBN	-	-	60%
FL-Next	tr=Putative phosphate transporter; Cryptomeria japonica (Japanese cedar) (Cupressus japonica).	-	-	72%
Blast2go	phosphate transporter	-	-	86%

Source	GOs	Term	Type	Identity
Blast2go	phosphate ion transport	GO:0006817	Biological Process	86%
Blast2go	transmembrane transport	GO:0055085	Biological Process	86%
Blast2go	inorganic phosphate transmembrane transporter activity	GO:0005315	Molecular Function	86%
Blast2go	integral to membrane	GO:0016021	Cellular Component	86%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	WW/Rsp5/WWP	IPR001202	-	-
Sma3	Hydroxymethylglutaryl-CoA reductase, class I/II	IPR002202	-	-
Sma3	Phosphate permease	IPR004738	-	-
Sma3	General substrate transporter	IPR005828	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase	IPR006186	-	-
Sma3	Major facilitator superfamily	IPR011701	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q1XG57

Fln msg: Overlapping hits, possible frame ERROR between 641 and 629, your sequence is shorter than subject: 287 - 544

Fln protein: VAKNAKQAASDMSKVLHMDIQEDRDTAEAISEETKFGLFSREFLRRHGLHLLGTTTTWFFLDIAFYSQNLFQNDIFTSIEWLPKAQTMNALEEVFKIARAQSLIALFSTVPGYWFTVALIDRIGRFTIQLMGFFFMTVFMFATAIPYNHWKAHNHLAFVVLYSFTFFFSNFGPNSTTFVVPAEIFPARLRSTCHGISAASGKAGAIVGxxxxxxTRHKNKVDPTGGYPPGIGTKNALLVMGAVNALGFLFTFLVPETKGKSLEELSGENEEEGNGSSDRSNRTMPV*

Protein Length: 288

Fln nts: TGGTTGCAAAAAATGCGAAGCAGGCCGCAAGTGACATGTCCAAGGTACTACACATGGACATTCAAGAAGATCGGGACACAGCAGAAGCCATCTCAGAGGAGACGAAATTCGGTCTGTTTTCCAGGGAATTTCTCAGACGGCACGGCTTGCATCTCCTCGGTACAACAACTACATGGTTTTTCCTAGACATAGCATTCTACAGCCAAAATCTGTTTCAGAACGACATCTTCACTTCCATAGAATGGCTGCCTAAAGCGCAAACGATGAACGCCCTGGAAGAAGTTTTCAAGATTGCAAGGGCACAGTCGCTGATTGCCCTCTTCTCGACTGTTCCGGGCTACTGGTTCACGGTTGCCTTGATAGATCGCATTGGGCGTTTTACCATTCAGCTAATGGGCTTCTTCTTCATGACAGTCTTCATGTTTGCTACAGCGATTCCATACAACCACTGGAAAGCCCATAACCATTTAGCTTTCGTAGTTCTCTATTCATTTACCTTCTTCTTCTCAAATTTCGGTCCCAACAGCACCACTTTCGTTGTTCCGGCCGAGATATTCCCAGCAAGGCTTCGTTCGACATGCCACGGGATATCTGCAGCTTCTGGGAAAGCCGGAGCCATCGTCGGGxxxxxxxxxxxxxxxxxxACGCGTCACAAGAATAAAGTTGACCCGACTGGAGGTTACCCTCCAGGAATCGGAACCAAAAACGCTCTATTAGTGATGGGTGCAGTAAATGCACTGGGCTTCCTTTTTACGTTTTTGGTACCTGAAACCAAGGGCAAGTCGCTGGAGGAACTGTCGGGGGAGAACGAAGAAGAAGGAAATGGATCGTCCGATCGGTCGAACAGAACTATGCCCGTGTAGTCACGGTGACATAATTGATATCTGACGCATGCCATTACTCGCCAGGCAGGAAAGTGTGTGTAATGTAGTTAAAAACTAGTTGTTATGTTCTGTGTTTATTTGGATGGCAGAAAAGTTGTGCGAGATTTGTGTCTGTAAGATATCGAGATACCTACCTCGAGATCTAAAAGTCGTTTGTATAGATTTCCATCTCCCCTGTAAGAGCAACTGGTGGAAGTTTGTTTTGATTAGTAAATTTTATTAC

Fln Alignment:

Contig11834___VAKNAKQAASDMSKVLHMDIQEDRDTAEAIS-EETKFGLFSREFXXXXXXXXXXXXXXWFFLDIAFYSQNLFQNDIFTSIEWLPKAQTMNALEEVFKIARAQSLIALFSTVPGYWFTVALIDRIGRFTIQLMGXXXXXXXXXXXXIPYNHWKA---------HNHLAFVVLYSFTFFFSNFGPNSTTFVVPAEIFPARLRSTCHXXXXXXXXXXXXXXXFGFxWVLATRHKNKVDPTGGYPPGIGTKNALLVMGAVNALGFLFTFLVPETKGK
Q1XG57_______________VERNAKQAAADMSRVMQVDIEEDRQKIDEIATREPSFGLFSAQFAKRHGLHLLGTTSTWLLLDVAYYSQNLFQKDIFTAIGWIPAGKKMNAIEEVYRIAKAQTLIALCSTVPGYWFTVFFIDRIGRFTIQLMGFFFMTVFMFALAIPYNHWRGTKCGDDYCDGNHIAFVVLYSFTFFFANFGPNATTFIVPAEVFPARLRSTCHGISAAAGKAGAIVGAFGFxYAAQSTHQSEVDH--GYHKGIGVKNSLILLGVTNAMGFLFTFLVPETNGK

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
513			25	75	0.996473
560	75			25	0.996473
643			25	75	0.996473
648	75		25		0.996473
651	25		75		0.996473
869		14		85	0.999981
924	83			16	0.999991
925	81	18			0.999994
995		83		16	0.994512
999	16			83	0.994512
1012	16			83	0.994512
1032			20	80	0.995493
1044			25	75	0.996473
1057		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain