SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene11821

Length: 787 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene11821 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	glycine-rich protein [Arabidopsis thaliana] ref\|NP_001190893.1\| glycine-rich protein [Arabidopsis thaliana] ref\|NP_001190894.1\| glycine-rich protein [Arabidopsis thaliana] gb\|AEE86144.1\| glycine-rich protein [Arabidopsis thaliana] gb\|AEE86145.1\| glycine-r	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Oryza sativa subsp. indica (Rice).	-	-	78%
Blast2go	uncharacterized protein	-	-	86%

Source	GOs	Term	Type	Identity
Blast2go	mitochondrion	GO:0005739	Cellular Component	86%
Blast2go	membrane	GO:0016020	Cellular Component	86%
Blast2go	vacuole	GO:0005773	Cellular Component	86%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase M14, carboxypeptidase A	IPR000834	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	Glycoside hydrolase, family 11, active site	IPR018208	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
464		16		83	0.994512
481			16	83	0.994512
484			16	83	0.994512
488	16			83	0.994512
493	80		20		0.995493
494		20		80	0.995493
495		20	80		0.995493
498			20	80	0.995493
499			20	80	0.995493
503		20		80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain