SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene11717

Length: 867 nt

Origin of reads: Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene11717

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Ricinus communis (Castor bean).	-	-	73%
Blast2go	beach domain-containing protein lvsa-like	-	-	80%

Source	GOs	Term	Type	Identity
Blast2go	response to abscisic acid stimulus	GO:0009737	Biological Process	80%
Blast2go	signal transduction	GO:0007165	Biological Process	80%
Blast2go	multidimensional cell growth	GO:0009825	Biological Process	80%
Blast2go	trichome morphogenesis	GO:0010090	Biological Process	80%
Blast2go	vacuole organization	GO:0007033	Biological Process	80%
Blast2go	metal ion binding	GO:0046872	Molecular Function	80%
Blast2go	chloroplast	GO:0009507	Cellular Component	80%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, FYVE-type	IPR000306	-	-
Sma3	Dynamin central domain	IPR000375	-	-
Sma3	BEACH domain	IPR000409	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	CRM1 C-terminal domain	IPR014877	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	Zinc finger, FYVE-related	IPR017455	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9S4P2

Fln msg: Distance to subject end: 620 aas, your sequence is shorter than subject: 288 - 3591

Fln protein: DSISAPVGWSDDQHSSANDASLHSALETGGKSSTMSLHITDGVHEMSEPGSTRQSSSQKIDNVRYADDKSEREVHDNGEYLIRPYLEPGEKIRFRYNCERVVGLDKHDGIFLIGEFCLYVIENFYIDESGHISEKAFEAELSVIDQALGVKNSAVGSIDLQSKASASWEANSQMWAGGRAWAYNGGAWGKEKVCASSNLPHPWRMWKLESVHELLKREYQLRPVAIELFSMDGYNDLLVFHKKERDEVFKNLVAMNLPRNSIRLDTTISGSSKQESNEGSRLFKIMAK

Protein Length: 289

Fln nts: GGATTCAATTTCTGCTCCAGTTGGGTGGAGTGATGATCAACACAGCAGTGCTAATGATGCAAGCTTACATTCTGCTCTTGAAACTGGTGGCAAATCAAGTACAATGTCACTACATATAACAGATGGAGTACATGAAATGTCTGAGCCTGGTTCAACGAGACAGTCTTCGTCACAGAAAATTGACAATGTGAGGTATGCAGATGATAAATCAGAAAGAGAAGTCCATGATAATGGCGAGTATTTGATTAGGCCTTATTTAGAACCTGGTGAAAAGATAAGGTTTCGGTACAATTGTGAGCGTGTTGTTGGACTTGACAAACATGACGGGATTTTTCTCATAGGTGAATTTTGCCTGTATGTCATTGAAAACTTTTACATTGATGAATCGGGGCATATTAGTGAGAAAGCTTTTGAGGCTGAACTGTCGGTGATAGACCAGGCCTTGGGTGTCAAAAACAGTGCTGTGGGAAGTATTGATTTACAGTCTAAGGCTTCTGCTTCTTGGGAAGCAAATTCCCAAATGTGGGCTGGAGGTAGAGCTTGGGCATACAATGGTGGGGCCTGGGGAAAGGAGAAGGTATGTGCTAGTAGTAATTTGCCTCATCCCTGGCGAATGTGGAAGTTGGAAAGTGTTCATGAGCTTTTAAAGCGAGAGTATCAGCTGCGGCCTGTTGCTATTGAGCTTTTTAGCATGGATGGATACAATGATCTTTTAGTCTTCCATAAAAAGGAACGGGATGAAGTGTTCAAAAATCTGGTGGCAATGAATCTTCCTCGAAATAGCATTAGGTTAGATACAACCATATCGGGTTCATCAAAGCAGGAGAGTAATGAAGGGAGTCGTCTGTTTAAAATCATGGCAAAATC

Fln Alignment:

Contig11717___SAPVGWSDDQHSSANDASLHSALETGGKSSTMSLHITDGVHEMSEPGSTRQSSSQKIDNVRYADDKSEREVHDNGEYLIRPYLEPGEKIRFRYNCERVVGLDKHDGIFLIGEFCLYVIENFYIDESGHISEKAFEAELSVIDQALGVKNSAVGSIDLQSKASASWEANSQMWAGGRAWAYNGGAWGKEKVCASSNLPHPWRMWKLESVHELLKREYQLRPVAIELFSMDGYNDLLVFHKKERDEVFKNLVAMNLPRNSIRLDTTISGSSKQESNEGSRLFKIMAK
B9S4P2_______________SGKIGWNDDRASSNNEASLHSALDFGVKSSTFSAPASESMHGRSDLGSPRQSSSNKIDDIKVLEDRLDKELNDNGEYLIRPYMEPLEKIRFKYNCERVVGLDKHDGIFLIGELCLYVIENFYIDDSGCICEKEGEDELSVIDQALGVKKDVTGSIDFQSKSTSSWSTVVKTCVGGRAWAYNGGAWGKEKVCTSGNLPHPWHMWKLNSVHELLKRDYQLRPVAIEIFSMDGCNDLLVFHKKEREEVFKNLVAMNLPRNSM-LDTTISGSTKQESNEGSRLFKLMAK

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
358	20		80		0.995493
436	66	33			1.0
438	50		16	33	1.0
440		66	33		1.0
441	66			33	1.0
443	33		66		1.0
450		33	66		1.0
592	16			83	0.994512
594			83	16	0.994512
612	20		80		0.995493
617	80			20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain