SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene11646

Length: 916 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene11646

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	CRT (chloroquine-resistance transporter)-like transporter 3 [Arabidopsis thaliana] gb\|AAM13018.1\| unknown protein [Arabidopsis thaliana] gb\|AAM91339.1\| unknown protein [Arabidopsis thaliana] dbj\|BAD44200.1\| unnamed protein product [Arabidopsis thaliana] g	-	-	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	68%
Blast2go	crt homolog 1-like	-	-	79%

Source	GOs	Term	Type	Identity
Blast2go	response to cadmium ion	GO:0046686	Biological Process	79%
Blast2go	defense response to oomycetes	GO:0002229	Biological Process	79%
Blast2go	glutathione transport	GO:0034635	Biological Process	79%
Blast2go	transmembrane transport	GO:0055085	Biological Process	79%
Blast2go	integral to membrane	GO:0016021	Cellular Component	79%
Blast2go	plastid	GO:0009536	Cellular Component	79%

Source	InterPros	Term	Type	e value	Identity
Sma3	ABC transporter, conserved site	IPR017871	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
316	84		15		0.999986
529		14		85	0.993533
676	85		14		0.993533
679		85	14		0.993533
680	85			14	0.993533
681			14	85	0.993533
682	14			85	0.993533
689			14	85	0.993533
690			14	85	0.993533
691		14	85		0.993533
693		85	14		0.993533
697		14	85		0.993533
698	85			14	0.993533
700	14		85		0.993533
750	85			14	0.993533
752			14	85	0.993533
841	83	16			0.994512
842	16	83			0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain