SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene11481

Length: 1153 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene11481 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	uncharacterized protein [Arabidopsis thaliana] sp\|Q9SUC9.1\|UGPI7_ARATH RecName: Full=Uncharacterized GPI-anchored protein At4g28100; Flags: Precursor emb\|CAB36779.1\| hypothetical protein [Arabidopsis thaliana] emb\|CAB79612.1\| hypothetical protein [Arabido	-	-	63%
FL-Next	sp=Uncharacterized GPI-anchored protein At4g28100; Arabidopsis thaliana (Mouse-ear cress).	-	-	63%
Blast2go	uncharacterized gpi-anchored protein at4g28100-like	-	-	70%

Source	GOs	Term	Type	e value	Identity
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	0.0	70%
Blast2go	anchored to plasma membrane	GO:0046658	Cellular Component	0.0	70%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: sp_plants

Fln subject: Q9SUC9

Fln msg: W2: There is no M at the beginning,

Fln protein: WALSLFVFIFVASFYFAALSAGDGEKGGGGGEGETGSSEAEQPWGSNTVTAFPVVEQGKETCHLDLSDELFGGVKEACGNGKELLDRSRCCPVLAAWLYAAHARTALKANARPVSSSQLQPLLPDDSQTCVNSLQSSLKTRGINIPSPNASCDPILCFCAIRLHHISSLDCPNAFNISGHHNAVAPLSAVRALESNCTSPSYQGCTKCLKALQKVKGRPGNDRHYSDRTSRMYSRDCELMGLTWLLAKNKTAYIPTVSAVLRALMYSAHPPHESQCSPDQENMPLAVDSLQLDHSSSAVPNAIRLRLGGLLSVFYVVALL*

Protein Length: 322

Fln nts: _-_ATGGGCACTATCGCTATTTGTGTTTATTTTTGTTGCCTCATTTTACTTTGCAGCATTGAGTGCAGGAGACGGGGAGAAGGGCGGAGGTGGAGGCGAAGGCGAAACAGGGAGTTCGGAGGCAGAGCAGCCGTGGGGTTCGAACACGGTCACTGCGTTTCCAGTTGTTGAGCAGGGGAAGGAGACTTGCCACCTGGATCTCTCGGACGAGCTCTTCGGAGGTGTGAAGGAGGCCTGCGGTAATGGAAAGGAGCTTCTCGACAGGAGCCGCTGCTGCCCTGTTTTGGCCGCCTGGTTATATGCTGCCCATGCCCGGACTGCCCTCAAGGCGAACGCGAGGCCTGTTTCTTCGTCCCAGTTGCAGCCTCTGTTACCCGACGATTCCCAGACATGCGTGAACAGCTTGCAGAGCTCTCTCAAGACTCGGGGCATCAATATCCCCAGTCCTAATGCTTCCTGCGACCCCATACTCTGTTTCTGCGCCATAAGGCTCCACCACATCAGTTCCCTAGACTGCCCCAACGCCTTCAATATCTCCGGTCACCACAATGCAGTCGCGCCCCTCTCTGCGGTTCGAGCCCTGGAGAGCAACTGCACTTCCCCTTCTTACCAGGGATGCACCAAGTGCCTCAAGGCACTCCAGAAGGTGAAGGGCCGTCCAGGCAACGATCGACATTATTCAGACAGAACCAGCAGGATGTACAGCAGAGACTGTGAATTAATGGGGTTGACGTGGTTGCTGGCAAAGAACAAGACTGCGTATATTCCCACCGTTTCTGCGGTGCTAAGAGCTCTCATGTACAGTGCCCATCCGCCTCATGAGTCACAGTGCAGTCCAGACCAAGAGAACATGCCCCTCGCCGTTGATTCGCTTCAGCTCGATCACTCTTCTTCTGCTGTGCCCAATGCCATCAGACTCCGGCTCGGTGGTCTCTTATCAGTTTTCTACGTTGTCGCGCTTCTTTAGGGCCATTCCGAAGCCTGATCGAGCAAGGTTCGATCCGGTTTATCTACCAGACAAACCCGATGTAATGTGCTCTGTTGTTTTTGTTGTTGCTGCCATGGCAAACGGAGCTTGTCGTTGTTGTAACTTGTACCGATAGTAAAGTTCTGTAATATTTTATTTCATTCAGTTTAGGTAATTGGTATTATTACC

Fln Alignment:

Contig11481___QPWGSNTVTAFPVVEQGKETCHLDLSDELFGGVKEACGNGKELLDRSRCCPVLAAWLYAAHARTALKANA---RPVSSSQLQPLLPDDSQTCVNSLQSSLKTRGINIPSPNASCDPILCFCAIRLHHISSLDCPNAFNISGHHNAVAPLSAVRALESNCTSPSYQGCTKCLKALQKVKGRPGNDRHYSDRTSRMYSRDCELMGLTWLLAKNKTAYIPTVSAVLRALMYSAHPPHESQCSPDQENMPLAVDSLQLDHSSSA
Q9SUC9_______________EPVQPNTVPAFPVETQA-QSCRLDLSNELFGGVNEACGRN---LDRSRCCPVLAAWLFAAHARSALQLPAPAPTPESSDPDEPMKPDDSQKCVNTLQSALLTKQIKIPQPNSSCDAILCFCGIRLHQISSLSCPAAFNVSSGFKNATPTAAVKNLEKECRNSSYSGCTRCLGALQKLKVRGGNKKTTTERGTKMMSKDCQLMGLTWLLARNKTAYIPTVSAVLRAIMYSPHPPHLNKCSPDQENMPLAVDSLQFQKSFSS

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
916		20		80	0.995493
931	20			80	0.995493
1010		80		20	0.995493
1037		80	20		0.995493
1040		80		20	0.995493
1098		25		75	0.996473
1138	75	25			0.996473
1139	75	25			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain