SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene11442

Length: 730 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene11442

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	protein trichome birefringence-like 5 [Arabidopsis thaliana] gb\|AED92864.1\| protein trichome birefringence-like 5 [Arabidopsis thaliana]	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	48%
Blast2go	protein trichome birefringence-like 5	-	-	81%

Source	ECs	Term	Type	e value	Identity
Blast2go	RNA-directed DNA polymerase.	EC:2.7.7.49	-	0.0	81%

Source	GOs	Term	Type	Identity
Blast2go	RNA-dependent DNA replication	GO:0006278	Biological Process	81%
Blast2go	RNA binding	GO:0003723	Molecular Function	81%
Blast2go	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	81%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Protein kinase C-like, phorbol ester/diacylglycerol binding	IPR002219	-	-
Sma3		IPR004253	-	-
Sma3	WRC	IPR014977	-	-
Sma3		IPR015706	-	-

Full-Lengther Next Prediction

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
517		66		33	0.997452
555			87	12	0.992554
556			87	12	0.992554
557	12		87		0.992554
559	12		87		0.992554
560	12		87		0.992554
563	87	12			0.992554
661			80	20	0.995493
677	20		80		0.995493
715	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain