SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene11416

Length: 3001 nt

Origin of reads: Biogeco1 v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene11416
ATGGGACCGGACATGGCCTCAGTTTCGTCTCAGGGTTAATTCTGGAGGTGAATCACTGCAGTCTCTTGATCGAATCGCGTAACGACGGAACAAAAACCAGAAGCCATGACGCTCGTCATGGGCAGAAACCCCGAGGACCTCATTAACTCCTTTGCTTTGAAGTTGGGAATGGACATCGATAGTAACGCTGAGAATGGCCTTTCGAAGCTGCAGGAGATTATGGTGGTACGCGCGGGCGAACAAAACGATGAGAACTACATCGAGCTCACGGTGGACGAACATGGCGAGTCTGATAATCTGGTGGGAGAATGGAGCAGGAAGGCTTATTTGTCGGCCAAAATGAGGCAATTGTCGCACGAGCTGAGAACGGATTTCAGGCCGGTTCGGCATTTGTCTCATGAATTGAAGGCTGACGTGAAGCGGATCACTCGGACCGCCAGTTCAATTACTGCGAAGGTTTTGTCGGTTCGTAGCACTCCGAGTGGAACCCCGAGGGCTTCGTCTGCGACGATCGGTGGTAAGCTGTCTAGACAGGAATCTGTAGCGCAGAATGCTTTGCAGGGGTTAAGGTCTATTAGTAAAACGGCGGAAGATTCGAACGCGGATTTTCAAGCGTTTTGGAAAGCCGTCGAAGCGCGTTTCGGTCAGCTGGCTTCTCCGGATGGATTACGGCTTTCTCGTGCTGTCTTTGGCCTTTGCATCGGTATGATGGATTCAAATGAATTTGCACTGGAGCTCTTTGATGCTCTCGCTCGAAGACGAGGATGGCATGATGTGGAGTTCATTAACAAGGAGCAGCTTCGTGATTTCTGCCTGCAGATCTCCGCTCAAAGCTTTGATTCTCGCCTGCAAATTTTCTTTGACATGTGTGACAAAAATGCAGACGGGCGGATTTCTGAGGACGAAATAAAAGAGGTTATTATGCTCAGTGCATCAGCTAACAAGCTTACGAAGCTCAAGGAACAAGCTGAAGAGTACGCAAATTTAATCATGGAAGAGTTGGATCCAGACCATATGGGCTATATTGAGCTAAGTCAGCTGAAAGCTCTGCTCCAAGGCTTGACTTATGGAAAGGAAGGGCATGCAAACAATAGTCAAAATTTGAGCCAGCAGATCTTACCGGTTCCAATCAGGAGAAATCCCATACAGAGAGCAATGCAAAACGCGAGATATCTATTGGACGAAAATTGGCAGAGGGCCTGGGTTATTGTCATATGGCTGGCGACTATGCTGGGGCTTTTCACGTGGAAATTCATACAGTACAGGAACAGAGGCATCTTCAAAGTAGCGGGATACTGTCTATGTGTGGCCAAAGGAAGCGCTGAAACCCTCAAACTTAACATGGCACTCATACTGTTGCCCGTCTGCAGGAACACGATAACATGGCTTCGCTCCACGATCTTAGGATCCATTGTGCCATTTGACGACAACATCAATTTCCACAAGACCATCGCCGGGGCCATTGTTATAGGCGTCATGCTTCACGGCCTGGATCATATAAGCTGCGATTTCATTAGAATTGCAAATTGCGACGAGGAATCGTATAATCTTTATCTTAAAGAATATTTTGGCAGTGAAAAGCCGAATTACGGAGATATCTTAGGAAGCACAGTAGGCATCACGGGGGTTTGTATGGTCGTACTCATGGCCATTGCCTTCATTCTCGCGACCTCCTGGTTTAGAAGAAGTTCAGTGAAACTTCCTCAGCAACTTGATAAATTGACCGGATTTAACGCTTTCTGGTATTCGCATCATGCATTTGTCGTGATTTACCTGCTTCTCATTGTTCATTCCATTCGCCTTTTCTTCGTGCGAGATTGGAGGGAGAAAACTACTTGGATGTATATTGCTGTTCCGGTGCTTTTATATTGCGGCGAGCGCACACTGAGAGCATTCAGAGCAGGGAATTATACTGTCAATATTGTCAAGGCGGCAGTTTATCGCGGAAACGTCCTGGCTTTGCATATGTCAAAACCTGCAGGCTTCGAGTACAAGAGTGGAATGTATTTATTTCTCCAGTGCCCCGAGATCTCGCCTTTCGAATGGCATCCATTCTCGATCACCTCTGCTCCGGATGATGAACACATTAGCGTGCATATTAGAACAGTTGGAGACTGGACGCAGGAGATGAAAAGAGTTTTCTCGCAGACAATGGAGCCCCCTACAGCTGGAAAAAGCGGACTTCTGAGAGCGGAGCGTGGACTCTACGGAGACGATGAAAACAAATCCATGTTTCCCAAGCTTCGGATCGACGGGCCATATGGAGCTCCCGCACAAAATTACAAGAAATATGACGTGCTACTGTTGATAGGTCTCGGAATTGGCGCTACTCCGTTCATAAGCATTCTCAAAGACATGTTAAATCACATCAAAATCGCAGATTCTGCTTACAAAAGGAAAAGGAAGGACCGGGGTCCGACAAACGCTTATTTCTACTGGGTTACAAGGGAGCAAGGCTCCTTCGACTGGTTCAAGGGGGTCATGAACGAAATAGCAGAGATGGACAGCAGGGCTGCTATTGAAATGCACAACTACCTGACGAGCGTTTATGAAGAAGGCGATGCCAGGTCGGCTTTAATTACAATGGTGCAAGCTCTGAATCATGCCAAGAATGGAGTCGATATTCTCTCAGGAACCAGGGTCAAGACTCACTTTGCCAGACCAAATTGGAAAAAGGTTTTCTCAAAAGTTGCTTCCGCTAATAAAGACGCTAAAATTGGTGTCTTTTATTGCGGGCCTCTAATTTTGGCCAAGGAGCTGAGAGCCATAGCCAAAGATTACAACCACAGAATGAACACTAAATTCGAGTTCCATAAAGAAAATTTCTAACACAGGGGAAGATTCCATCTGATCTGAAATGTTTCCCGGTCCTCGTATTCGCAGCAATAAGGTCTCGAGTTCGAATTCCGAAAGTTCATCTTCGTCAACGAATCTAGCTGTGTGCGCAATTTGCAAGCGTAGGCGACATAGGAAACCGTTGAAAATAAAGGATCTATATATA

Ace file of the UniGene sp_v2.0_unigene11416

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Respiratory burst oxidase, putative n=1 Tax=Ricinus communis RepID=B9RCI7_RICCO	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	62%
Blast2go	respiratory burst oxidase homolog protein f-like	-	-	71%

Source	ECs	Term	Type	e value	Identity
Blast2go	Oxidoreductases, Acting on NADH or NADPH, With a oxygen as acceptor.	EC:1.6.3.-	-	0.0	71%

Source	GOs	Term	Type	Identity
Blast2go	metal ion binding	GO:0046872	Molecular Function	71%
Blast2go	oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor	GO:0050664	Molecular Function	71%
Blast2go	membrane	GO:0016020	Cellular Component	71%

Source	InterPros	Term	Type	Identity
Sma3	Cytochrome b245, heavy chain	IPR000778	-	-
Sma3	Calcium-binding EF-hand	IPR002048	-	-
Sma3	EF-hand-like domain	IPR011992	-	-
Sma3	FAD-binding 8	IPR013112	-	-
Sma3	Ferric reductase, NAD binding	IPR013121	-	-
Sma3	Flavoprotein transmembrane component	IPR013130	-	-
Sma3	NADPH oxidase Respiratory burst	IPR013623	-	-
Sma3	Ferredoxin reductase-type FAD-binding domain	IPR017927	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	EF-hand	IPR018248	-	-
Sma3	EF-HAND 2	IPR018249	-	-
Sma3	Chaperonin Cpn60, conserved site	IPR018370	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ABF5

Fln msg: your sequence is longer than subject: 908 - 358

Fln protein: MTLVMGRNPEDLINSFALKLGMDIDSNAENGLSKLQEIMVVRAGEQNDENYIELTVDEHGESDNLVGEWSRKAYLSAKMRQLSHELRTDFRPVRHLSHELKADVKRITRTASSITAKVLSVRSTPSGTPRASSATIGGKLSRQESVAQNALQGLRSISKTAEDSNADFQAFWKAVEARFGQLASPDGLRLSRAVFGLCIGMMDSNEFALELFDALARRRGWHDVEFINKEQLRDFCLQISAQSFDSRLQIFFDMCDKNADGRISEDEIKEVIMLSASANKLTKLKEQAEEYANLIMEELDPDHMGYIELSQLKALLQGLTYGKEGHANNSQNLSQQILPVPIRRNPIQRAMQNARYLLDENWQRAWVIVIWLATMLGLFTWKFIQYRNRGIFKVAGYCLCVAKGSAETLKLNMALILLPVCRNTITWLRSTILGSIVPFDDNINFHKTIAGAIVIGVMLHGLDHISCDFIRIANCDEESYNLYLKEYFGSEKPNYGDILGSTVGITGVCMVVLMAIAFILATSWFRRSSVKLPQQLDKLTGFNAFWYSHHAFVVIYLLLIVHSIRLFFVRDWREKTTWMYIAVPVLLYCGERTLRAFRAGNYTVNIVKAAVYRGNVLALHMSKPAGFEYKSGMYLFLQCPEISPFEWHPFSITSAPDDEHISVHIRTVGDWTQEMKRVFSQTMEPPTAGKSGLLRAERGLYGDDENKSMFPKLRIDGPYGAPAQNYKKYDVLLLIGLGIGATPFISILKDMLNHIKIADSAYKRKRKDRGPTNAYFYWVTREQGSFDWFKGVMNEIAEMDSRAAIEMHNYLTSVYEEGDARSALITMVQALNHAKNGVDILSGTRVKTHFARPNWKKVFSKVASANKDAKIGVFYCGPLILAKELRAIAKDYNHRMNTKFEFHKENF*

Protein Length: 909

Fln nts: ATGGGACCGGACATGGCCTCAGTTTCGTCTCAGGGTTAATTCTGGAGGTGAATCACTGCAGTCTCTTGATCGAATCGCGTAACGACGGAACAAAAACCAGAAGCC_-_ATGACGCTCGTCATGGGCAGAAACCCCGAGGACCTCATTAACTCCTTTGCTTTGAAGTTGGGAATGGACATCGATAGTAACGCTGAGAATGGCCTTTCGAAGCTGCAGGAGATTATGGTGGTACGCGCGGGCGAACAAAACGATGAGAACTACATCGAGCTCACGGTGGACGAACATGGCGAGTCTGATAATCTGGTGGGAGAATGGAGCAGGAAGGCTTATTTGTCGGCCAAAATGAGGCAATTGTCGCACGAGCTGAGAACGGATTTCAGGCCGGTTCGGCATTTGTCTCATGAATTGAAGGCTGACGTGAAGCGGATCACTCGGACCGCCAGTTCAATTACTGCGAAGGTTTTGTCGGTTCGTAGCACTCCGAGTGGAACCCCGAGGGCTTCGTCTGCGACGATCGGTGGTAAGCTGTCTAGACAGGAATCTGTAGCGCAGAATGCTTTGCAGGGGTTAAGGTCTATTAGTAAAACGGCGGAAGATTCGAACGCGGATTTTCAAGCGTTTTGGAAAGCCGTCGAAGCGCGTTTCGGTCAGCTGGCTTCTCCGGATGGATTACGGCTTTCTCGTGCTGTCTTTGGCCTTTGCATCGGTATGATGGATTCAAATGAATTTGCACTGGAGCTCTTTGATGCTCTCGCTCGAAGACGAGGATGGCATGATGTGGAGTTCATTAACAAGGAGCAGCTTCGTGATTTCTGCCTGCAGATCTCCGCTCAAAGCTTTGATTCTCGCCTGCAAATTTTCTTTGACATGTGTGACAAAAATGCAGACGGGCGGATTTCTGAGGACGAAATAAAAGAGGTTATTATGCTCAGTGCATCAGCTAACAAGCTTACGAAGCTCAAGGAACAAGCTGAAGAGTACGCAAATTTAATCATGGAAGAGTTGGATCCAGACCATATGGGCTATATTGAGCTAAGTCAGCTGAAAGCTCTGCTCCAAGGCTTGACTTATGGAAAGGAAGGGCATGCAAACAATAGTCAAAATTTGAGCCAGCAGATCTTACCGGTTCCAATCAGGAGAAATCCCATACAGAGAGCAATGCAAAACGCGAGATATCTATTGGACGAAAATTGGCAGAGGGCCTGGGTTATTGTCATATGGCTGGCGACTATGCTGGGGCTTTTCACGTGGAAATTCATACAGTACAGGAACAGAGGCATCTTCAAAGTAGCGGGATACTGTCTATGTGTGGCCAAAGGAAGCGCTGAAACCCTCAAACTTAACATGGCACTCATACTGTTGCCCGTCTGCAGGAACACGATAACATGGCTTCGCTCCACGATCTTAGGATCCATTGTGCCATTTGACGACAACATCAATTTCCACAAGACCATCGCCGGGGCCATTGTTATAGGCGTCATGCTTCACGGCCTGGATCATATAAGCTGCGATTTCATTAGAATTGCAAATTGCGACGAGGAATCGTATAATCTTTATCTTAAAGAATATTTTGGCAGTGAAAAGCCGAATTACGGAGATATCTTAGGAAGCACAGTAGGCATCACGGGGGTTTGTATGGTCGTACTCATGGCCATTGCCTTCATTCTCGCGACCTCCTGGTTTAGAAGAAGTTCAGTGAAACTTCCTCAGCAACTTGATAAATTGACCGGATTTAACGCTTTCTGGTATTCGCATCATGCATTTGTCGTGATTTACCTGCTTCTCATTGTTCATTCCATTCGCCTTTTCTTCGTGCGAGATTGGAGGGAGAAAACTACTTGGATGTATATTGCTGTTCCGGTGCTTTTATATTGCGGCGAGCGCACACTGAGAGCATTCAGAGCAGGGAATTATACTGTCAATATTGTCAAGGCGGCAGTTTATCGCGGAAACGTCCTGGCTTTGCATATGTCAAAACCTGCAGGCTTCGAGTACAAGAGTGGAATGTATTTATTTCTCCAGTGCCCCGAGATCTCGCCTTTCGAATGGCATCCATTCTCGATCACCTCTGCTCCGGATGATGAACACATTAGCGTGCATATTAGAACAGTTGGAGACTGGACGCAGGAGATGAAAAGAGTTTTCTCGCAGACAATGGAGCCCCCTACAGCTGGAAAAAGCGGACTTCTGAGAGCGGAGCGTGGACTCTACGGAGACGATGAAAACAAATCCATGTTTCCCAAGCTTCGGATCGACGGGCCATATGGAGCTCCCGCACAAAATTACAAGAAATATGACGTGCTACTGTTGATAGGTCTCGGAATTGGCGCTACTCCGTTCATAAGCATTCTCAAAGACATGTTAAATCACATCAAAATCGCAGATTCTGCTTACAAAAGGAAAAGGAAGGACCGGGGTCCGACAAACGCTTATTTCTACTGGGTTACAAGGGAGCAAGGCTCCTTCGACTGGTTCAAGGGGGTCATGAACGAAATAGCAGAGATGGACAGCAGGGCTGCTATTGAAATGCACAACTACCTGACGAGCGTTTATGAAGAAGGCGATGCCAGGTCGGCTTTAATTACAATGGTGCAAGCTCTGAATCATGCCAAGAATGGAGTCGATATTCTCTCAGGAACCAGGGTCAAGACTCACTTTGCCAGACCAAATTGGAAAAAGGTTTTCTCAAAAGTTGCTTCCGCTAATAAAGACGCTAAAATTGGTGTCTTTTATTGCGGGCCTCTAATTTTGGCCAAGGAGCTGAGAGCCATAGCCAAAGATTACAACCACAGAATGAACACTAAATTCGAGTTCCATAAAGAAAATTTCTAA___CACAGGGGAAGATTCCATCTGATCTGAAATGTTTCCCGGTCCTCGTATTCGCAGCAATAAGGTCTCGAGTTCGAATTCCGAAAGTTCATCTTCGTCAACGAATCTAGCTGTGTGCGCAATTTGCAAGCGTAGGCGACATAGGAAACCGTTGAAAATAAAGGATCTATATATA

Fln Alignment:

Contig11416___VVIYLLLIVHSIRLFFVRDWREKTTWMYIAVPVLLYCGERTLRAFRAGNYTVNIVKAAVYRGNVLALHMSKPAGFEYKSGMYLFLQCPEISPFEWHPFSITSAPDDEHISVHIRTVGDWTQEMKRVFSQTMEPPTAGKSGLLRAERGLYGDDENKSMFPKLRIDGPYGAPAQNYKKYDVLLLIGLGIGATPFISILKDMLNHIKIAD------SAYKRKRKDRGPTNAYFYWVTREQGSFDWFKGVMNEIAEMDSRAAIEMHNYLTSVYEEGDARSALITMVQALNHAKNGVDILSGTRVKTHFARPNWKKVFSKVASANKDAKIGVFYCGPLILAKELRAIAKDYNHRMNTKFEFHKENF
D5ABF5_______________MIVYTLLIVHGVFLYLTHKWYKKTTWMYLAVPVLLYGGERILRAFRSGSKPVQILKVAIYPGNVLTLHMSKPQGFRYKSGQYMFVNCPAVSSFEWHPFSITSAPGDNYLSVHIRTLGDWTRELKNSFAEVCEPPMGGKSGLLRAD---YMQGKNNPRFPRLLIDGPYGAPAQDYKKYDVLLLVGLGIGATPFISILKDIVNHMKVSEEERNIENVGKQKKKTFNTVRAFFYWVTREEGSFDWFKGVMNEVAEIDQKGIIELHNYCTSVYEEGDARSALIAMLQALNHAKHGVDIVSGTRVCTHFAKPNWRNVFKSITLKHKDSRVGVFYCGPAALTDDLRQLSLDFTRKTSTRFDFHKENF

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
810		20		80	0.995493
811		75		25	0.996473
812		25		75	0.996473
821	25		75		0.996473
824		75		25	0.996473
826		75		25	0.996473
828			75	25	0.996473
829		75		25	0.996473
831		75	25		0.996473
833	66	33			0.997452
1517		10		90	0.90298
1722		20		80	0.995493
1742	12	87			0.992554
1746			12	87	0.992554
1787		12		87	0.992554
1842	87		12		0.992554
2162		90	10		0.90298
2303	66		33		1.0
2315	25			75	1.0
2364	87		12		0.992554
2365	87		12		0.992554
2366			12	87	0.992554
2567		60		40	1.0
2954	83	16			0.994512

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain