SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene11402

Length: 921 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene11402 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	RNA-binding protein NOB1 [Arabidopsis thaliana] dbj\|BAB09721.1\| unnamed protein product [Arabidopsis thaliana] gb\|AED94652.1\| RNA-binding protein NOB1 [Arabidopsis thaliana]	-	-	51%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	61%
Blast2go	rna-binding protein nob1	-	-	68%

Source	InterPros	Term	Type	Identity
Sma3	Nucleotide binding protein, PINc	IPR006596	-	-
Sma3	Nin one binding (NOB1) Zn-ribbon-like	IPR014881	-	-
Sma3	D-site 20S pre-rRNA nuclease	IPR017117	-	-

Full-Lengther Next Prediction

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
274	75		25		0.996473
402		60		40	1.0
411			20	80	0.995493
550	71		28		1.0
563		14		85	0.993533
595	66	33			1.0
627	33			66	1.0
640		33		66	1.0
793		80		20	0.995493
794		20		80	0.995493
796	20	80			0.995493
797		80		20	0.995493
863		33	66		0.997452
868	66			33	0.997452
870		66		33	0.997452
871		66		33	0.997452
872	66		33		0.997452
874			66	33	0.997452
876	33			66	0.997452
880		33	66		0.997452
881	66			33	0.997452
883			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain