SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene11276

Length: 1470 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene11276 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	mitochondrial ferredoxin 1 [Arabidopsis thaliana] emb\|CAB81087.1\| putative protein [Arabidopsis thaliana] dbj\|BAB79226.1\| MFDX1 [Arabidopsis thaliana] gb\|AAL38756.1\| unknown protein [Arabidopsis thaliana] gb\|AAM14263.1\| unknown protein [Arabidopsis thalia	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	82%
Blast2go	2fe-2s ferredoxin-like	-	-	85%

Source	GOs	Term	Type	Identity
Blast2go	pollen tube development	GO:0048868	Biological Process	85%
Blast2go	metal ion binding	GO:0046872	Molecular Function	85%
Blast2go	electron carrier activity	GO:0009055	Molecular Function	85%
Blast2go	2 iron, 2 sulfur cluster binding	GO:0051537	Molecular Function	85%
Blast2go	mitochondrion	GO:0005739	Cellular Component	85%

Source	InterPros	Term	Type	Identity
Sma3	2Fe-2S ferredoxin-type domain	IPR001041	-	-
Sma3	Adrenodoxin	IPR001055	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Beta-grasp domain	IPR012675	-	-
Sma3	Adrenodoxin, iron-sulphur binding site	IPR018298	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A9G4

Fln msg:

Fln protein: MGLLCRLTTLFYRELHGLGLPEACHSNGKLNPANYSFDQFRVWRMGISKAFQMQPFAPERPPYEETMKERLPEPLSFDLYRSRCSSDHRGRAIASSERCWLNEGRKALKWEPNRIISDQMKYKRNIHSLQKRNFASESDKANEHQQEANTETISVTFVDKDGEEKTVKVPVGMSMLEAAHENDIDLEGACEGSLACSTCHIIVMDEDYYNNLPEPTDEENDMLDLAFGLTETSRLGCQVIAKPELDGMKVALPAATRNFAVDGYVPKPH*

Protein Length: 271

Fln nts: ATGGGGGAAGAATCTCGTTCCGGCTGCTTTTGATTCTTAATTTTCTCGGCGGCGGGGTCATCTCATCCAGTTCCAAATGGCAATAAAACTTTTTCTTTACTTCTAGATCCTCCACTCTTTATCAGAACCAAGAACCCAGAGTTCAAGCCTCAGTTTGATGAGAAATCC_-_ATGGGACTTCTGTGTCGCCTGACAACTCTATTCTACCGGGAGCTTCACGGATTAGGGCTTCCCGAAGCTTGTCATTCGAATGGAAAGCTTAATCCGGCGAATTATTCATTTGATCAGTTTAGGGTTTGGAGAATGGGGATTTCCAAAGCATTTCAAATGCAGCCATTTGCACCCGAAAGACCACCTTACGAGGAAACGATGAAAGAACGCTTGCCGGAGCCACTGTCCTTCGATTTATACAGGTCAAGATGCTCGTCGGATCACCGGGGCAGGGCGATTGCATCGTCGGAGAGGTGCTGGTTAAACGAAGGCCGGAAGGCCTTAAAATGGGAGCCAAACCGTATTATTAGTGACCAGATGAAGTATAAGAGAAACATCCATTCTCTCCAGAAGAGGAATTTCGCATCAGAGTCGGATAAAGCCAATGAACACCAGCAAGAAGCTAACACTGAAACAATCTCGGTAACATTTGTTGACAAGGATGGTGAAGAAAAGACTGTGAAAGTGCCAGTTGGAATGTCGATGCTTGAAGCTGCTCATGAGAATGACATAGACCTTGAAGGGGCATGCGAAGGATCACTTGCCTGTTCTACTTGTCATATTATTGTCATGGATGAGGATTACTATAACAATCTACCGGAGCCAACAGATGAAGAGAATGACATGTTAGATCTTGCTTTTGGCCTTACAGAGACGTCTCGGTTGGGTTGTCAAGTCATTGCTAAGCCGGAGCTTGATGGGATGAAAGTTGCTTTGCCAGCTGCCACAAGGAATTTTGCTGTAGATGGATATGTTCCCAAGCCCCATTAG___GATGTGGTTTTGAAGATGATATTATCTTGATCATCGTTCTTATTCTTGTAACAACAATCCACATTACTTTTATATGGAGTCATTGCATCTTTTGTAATGAGAGCAATAATGATTTTTGCTTCGTTCTGCCCAAGCATTTTTGTGGATTGTTTAATAAGTCTGAAAATTATTGGTTCTGGCAAAAGTTGATATTGCCCCGCTGCTAGAACCTTTCCTCTCAACTAAGGTCAGCTGTTTTCCTTCAAGGATCAATTACATTGACGATAATGATAGCAAAATCCCACATTTGTTATCTTGATGATGCAAAATTTAAAGGTGCTTCCACAAATGCCACCCGGATCAGTTGTAACTGCATGCATTTGGGAAATTTTCTTTGGATATGCTATGCATGTATTACCAAGTAGCTCAGGAGTCTAAATATATGCGGTGTGGCCCAGAAACTACTTTCTCGTTCAAAAACTAGATATTCAATATAGCAGGTGATTAAATTGC

Fln Alignment:

Contig11276___MGLLCRLTTLFYRELHGLGLPEACHSNGKLNPANYSFDQFRVWRMGISKAFQMQPFAPERPPYEETMKERLPEPLSFDLYRSRCSSDHRGRAIASSERCWLNEGRKALKWEPNRIISDQMKYKRNIHSLQKRNFASESDKANEHQQEANTETISVTFVDKDGEEKTVKVPVGMSMLEAAHENDIDLEGACEGSLACSTCHIIVMDEDYYNNLPEPTDEENDMLDLAFGLTETSRLGCQVIAKPELDGMKVALPAATRNFAVDGYVPKPH
D5A9G4_______________MALLCRRKTLLYRELHGLGLRESYYSNGKFNRVISSFDQFRVSRMGISKAVQMQP-AVKKPSDEEMTKERLPEPRPFDLYRSICSSDRRGGAVAALEG-WLNGGRKAAKWEPNRVISDPMKYKRDIHALQKRNFASESDKADENQQEANTETISVTFVDKDGEENTIKVPVGMSMLEAAHENDIELEGACEGSLACSTCHVILMDEDYYNKLPEPTDEENDMLDLAFGLTETSRLGCQVIAKPELDGMKVALPAATRNFAVDGYVPKPH

SNPs (tot: 43)

Position	A %	C %	G %	T %	Probability
428	85		14		0.993533
434		14	85		0.993533
436			14	85	0.993533
437		14		85	0.993533
438		14	85		0.993533
439	14			85	0.993533
440	14			85	0.993533
442			14	85	0.993533
447	85	14			0.993533
451		14		85	0.993533
452	71		28		1.0
455	83			16	0.994512
460	16			83	0.994512
462	83		16		0.994512
466	83	16			0.994512
469		16		83	0.994512
470	83		16		0.994512
521	85		14		0.993533
574		80		20	0.995493
817	75		25		1.0
835			12	87	0.999964
891	90	10			0.90298
893		10		90	0.90298
894	10	90			0.90298
926	14		85		0.993533
1028	25		75		0.996473
1055		75		25	0.996473
1119	50		50		1.0
1120	50			50	1.0
1179	50	50			1.0
1218	10			90	0.90298
1227	55		44		1.0
1342	33		66		1.0
1354			66	33	1.0
1361		33	66		1.0
1364			33	66	1.0
1366		33		66	1.0
1370	66		33		1.0
1373	60	40			1.0
1375	60	40			1.0
1378	60	40			1.0
1379	60		40		1.0
1388		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain