SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene11260

Length: 488 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene11260
CGTCGTGACCTTGGCTGTCACTCAGTAATTTTTATGGAGAGATCGGTCTGGAGATCGATTCTCCGCAAGGGCAATTTCTCTCTAAATCTTCAACCTATGGCCCCGAATGCGCCCGAATTTGTACCGTGGGGCGGTGGTGCGTACCAGTAAAATCCGTTTTCAACGGTCATTGTTAACTTCGTCGGAGCAGAGATGGCACAGCCGAAGGCGGCCGGTTGCTCCGGATTTTTGGAGCTGGAGGTCGGCAACACGGTTGAGTCGTTGCAGGGTCTGATGGAGACGCAGAGAGAGCTCGTGCAACACCAGATCGCCGAGTTGCAGAGGATCGTGGTCTTACAATGCCGACTTACTGGCATAAATCCCCTCTCTCAAGAAATGGTCTGCTTTGCATTTCGTTTCTTAAAACTGCTTACATGTGCTATTGTCAAATTCAAGGTTTTTGATTGCGACAAAATCTATTAAATCTAAAACCTTTTCTCTTTACAATG

Ace file of the UniGene sp_v2.0_unigene11260

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Homeobox protein LUMINIDEPENDENS, putative n=1 Tax=Ricinus communis RepID=B9S3T8_RICCO	-	-	3.0e-09	56%
FL-Next	sp=Homeobox protein LUMINIDEPENDENS; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	52%
Blast2go	luminidependens	-	-	6.94779e-10	76%

Source	GOs	Term	Type	e value	Identity
Blast2go	positive regulation of flower development	GO:0009911	Biological Process	6.94779e-10	76%
Blast2go	vegetative to reproductive phase transition of meristem	GO:0010228	Biological Process	6.94779e-10	76%
Blast2go	transcription, DNA-dependent	GO:0006351	Biological Process	6.94779e-10	76%
Blast2go	DNA binding	GO:0003677	Molecular Function	6.94779e-10	76%
Blast2go	protein binding	GO:0005515	Molecular Function	6.94779e-10	76%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	6.94779e-10	76%
Blast2go	nucleus	GO:0005634	Cellular Component	6.94779e-10	76%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: Q38796

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 861 aas, your sequence is shorter than subject: 90 - 953

Fln protein: MAQPKAAGCSGFLELEVGNTVESLQGLMETQRELVQHQIAELQRIVVLQCRLTGINPLSQEMVCFAFRFLKLLTCAIVKFKVFDCDKIY*

Protein Length: 91

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTAATTTTTATGGAGAGATCGGTCTGGAGATCGATTCTCCGCAAGGGCAATTTCTCTCTAAATCTTCAACCTATGGCCCCGAATGCGCCCGAATTTGTACCGTGGGGCGGTGGTGCGTACCAGTAAAATCCGTTTTCAACGGTCATTGTTAACTTCGTCGGAGCAGAG_-_ATGGCACAGCCGAAGGCGGCCGGTTGCTCCGGATTTTTGGAGCTGGAGGTCGGCAACACGGTTGAGTCGTTGCAGGGTCTGATGGAGACGCAGAGAGAGCTCGTGCAACACCAGATCGCCGAGTTGCAGAGGATCGTGGTCTTACAATGCCGACTTACTGGCATAAATCCCCTCTCTCAAGAAATGGTCTGCTTTGCATTTCGTTTCTTAAAACTGCTTACATGTGCTATTGTCAAATTCAAGGTTTTTGATTGCGACAAAATCTATTAAATCTAAAACCTTTTCTCTTTACAATG

Fln Alignment:

Contig11260___ELEVGNTVESLQGLMETQRELVQHQIAELQRIVVLQCRLTGINPLSQEMVCFA
Q38796_______________EIEIGSSVESLMELLDSQKVLFHSQIDQLQDVVVAQCKLTGVNPLAQEMAAGA

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
25	20		80		0.995493
28	66	16		16	0.988813
29	83		16		0.994512
31		16		83	0.994512
32			16	83	0.994512
34			16	83	0.994512
37			83	16	0.994512
41	83	16			0.994512
42			83	16	0.994512
43	83		16		0.994512
46	16		83		0.994512
47		16	83		0.994512
50	16			83	0.994512
133		83		16	0.994512
289	75		25		1.0
313		72	27		1.0
346	70		30		1.0
371		83		16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain