SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene11252

Length: 929 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene11252

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Glycosyltransferase n=1 Tax=Lycium barbarum RepID=B6EWX9_LYCBA	-	-	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	65%
Blast2go	udp-glycosyltransferase 85a2	-	-	71%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Glycosyltransferases, Hexosyltransferases.	EC:2.4.1.-	-	0.0	71%

Source	KEGGs	Term	Identity
Blast2go	Fructose and mannose metabolism	00051	71%
Blast2go	N-Glycan biosynthesis	00510	71%
Blast2go	Mucin type O-Glycan biosynthesis	00512	71%
Blast2go	Various types of N-glycan biosynthesis	00513	71%
Blast2go	Other types of O-glycan biosynthesis	00514	71%
Blast2go	Biosynthesis of 12-, 14- and 16-membered macrolides	00522	71%
Blast2go	Glycosaminoglycan biosynthesis - keratan sulfate	00533	71%
Blast2go	Lipopolysaccharide biosynthesis	00540	71%
Blast2go	Peptidoglycan biosynthesis	00550	71%
Blast2go	Glycerolipid metabolism	00561	71%
Blast2go	Glycosylphosphatidylinositol(GPI)-anchor biosynthesis	00563	71%
Blast2go	Sphingolipid metabolism	00600	71%
Blast2go	Glycosphingolipid biosynthesis - lacto and neolacto series	00601	71%
Blast2go	Glycosphingolipid biosynthesis - globo series	00603	71%
Blast2go	Glycosphingolipid biosynthesis - ganglio series	00604	71%
Blast2go	Carotenoid biosynthesis	00906	71%
Blast2go	Zeatin biosynthesis	00908	71%
Blast2go	Flavonoid biosynthesis	00941	71%
Blast2go	Anthocyanin biosynthesis	00942	71%
Blast2go	Flavone and flavonol biosynthesis	00944	71%
Blast2go	Stilbenoid, diarylheptanoid and gingerol biosynthesis	00945	71%
Blast2go	Betalain biosynthesis	00965	71%
Blast2go	Biosynthesis of type II polyketide products	01057	71%
Blast2go	Metabolic pathways	01100	71%
Blast2go	Biosynthesis of secondary metabolites	01110	71%

Source	GOs	Term	Type	e value	Identity
Blast2go	metabolic process	GO:0008152	Biological Process	0.0	71%
Blast2go	transferase activity, transferring hexosyl groups	GO:0016758	Molecular Function	0.0	71%

Source	InterPros	Term	Type	Identity
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	UDP-glucuronosyl/UDP-glucosyltransferase	IPR002213	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQW4

Fln msg: Overlapping hits, possible frame ERROR between 105 and 84, Distance to subject end: 33 aas, your sequence is shorter than subject: 310 - 476

Fln protein: KLGIPRVSFWTHSACGFCAYFFGPFWFxxxxxxxxxDDKSLTDGYMEQIITCIPGMPPLRLKDLPTAFRHKDMFEFVTCEVQAALESDLLLLNTFDELDRPVLDALRERLPPLYTIGPLVLQAESGENRISGLSASLWTEETECMKWLDCQKPYSVIYICFGSIAVMTNQELLELAWGLEASKQPFLWVIRPDLIHGHSAVLPSEFLEKVKDRSFLVSWASQMKVLSHPSVGGFLTHSGWNSTLESICAGVPMISWPFLGEQPTNRRFVSGVWNIGMAMNEVVRREDVEDMVRRLMSGEEGKQMGKRIGR

Protein Length: 311

Fln nts: AAGTTGGGGATTCCGAGAGTATCCTTTTGGACTCACAGTGCTTGTGGCTTTTGCGCTTATTTCTTCGGCCCCTTCTGGTTCxxxxxxxxxxxxxxxxxxxxxxxxxxxGATGACAAGAGTTTAACAGATGGATACATGGAACAAATAATCACCTGCATTCCTGGAATGCCCCCATTGCGTCTCAAAGATCTTCCCACCGCCTTTAGACACAAAGACATGTTCGAGTTTGTTACATGTGAAGTGCAGGCCGCTCTGGAATCGGATCTACTATTACTAAATACCTTTGATGAGCTTGATCGTCCTGTACTCGACGCACTCCGAGAAAGGCTTCCACCATTGTACACGATAGGCCCTCTTGTTTTACAGGCAGAATCTGGAGAAAATAGAATATCTGGTCTCTCTGCAAGCTTGTGGACCGAAGAAACGGAATGTATGAAATGGTTGGACTGCCAAAAACCCTATTCCGTTATTTATATTTGCTTCGGAAGCATAGCAGTTATGACTAACCAGGAACTCTTAGAGTTAGCATGGGGTTTAGAGGCTAGTAAGCAGCCTTTTCTGTGGGTTATTCGTCCTGATCTCATCCATGGTCACTCTGCTGTGCTGCCATCTGAGTTTTTAGAGAAAGTGAAGGACAGAAGTTTCTTGGTGTCATGGGCGTCTCAGATGAAAGTGCTATCACATCCTTCAGTGGGAGGGTTTCTGACCCATAGTGGATGGAATTCTACACTGGAGAGTATCTGTGCTGGTGTACCCATGATATCATGGCCCTTCCTTGGCGAGCAGCCGACTAACAGGAGATTCGTTAGCGGAGTGTGGAATATTGGAATGGCAATGAATGAAGTTGTGAGGAGAGAAGATGTGGAAGACATGGTAAGGAGATTGATGAGTGGTGAGGAAGGGAAACAAATGGGGAAGAGAATTGGACGG

Fln Alignment:

Contig11252___KLGIPRVSFWTHSACGFCAYFFGPFWFAxxxxxxxDDDKSLTDGYMEQIITCIPGMPPLRLKDLPTAFRHKDMFEFVTCEVQAALESDLLLLNTFDELDRPVLDALRERLPPLYTIGPLVLQAESGENRISGLSASLWTEETECMKWLDCQKPYSVIYICFGSIAVMTNQELLELAWGLEASKQPFLWVIRPDLIHGHSAVLPSEFLEKVKDRSFLVSWASQMKVLSHPSVGGFLTHSGWNSTLESICAGVPMISWPFLGEQPTNRRFVSGVWNIGMAMNXXXXXXXXXXXXXXLMSGEEGKQMGKRIG
B8LQW4_______________KLAVPRVSFWTHSACGFCAYFFAPLLVGxxxxxxxDDDRCLTNGCMEQIITCIPGMPPLRVKDLPTSLRHKDMLEIVTSEAQAALEADLVLLNTFDELDRPILDALLKRLPALYTIGPLVLQAESGNDRVSGISASLWTEETGCVEWLDCQKPYSVIYVCFGSVAVMSDQELLELAWGLEASKQPFLWVIRPDLIHGDSAVLPSEFLEKVKDRSFLVKWAPQMKVLTHRSVGGFLTHSGWNSTLESICAGVPMISWPFLAEQPTNRRFVSGVWNIGMAMNEVVRREDVEDMVRRLMSGEEGRRMRKRIG

SNPs (tot: 43)

Position	A %	C %	G %	T %	Probability
303		25		75	0.996473
304	50		50		1.0
327	50		50		1.0
336		75	25		0.996473
486	80	20			0.995493
547	83		16		0.994512
548	83		16		0.994512
552	16		83		0.994512
585		71		28	1.0
591		28		71	1.0
612		16		83	0.994512
628	83		16		0.994512
632	85		14		0.993533
641	85		14		0.993533
646	11	88			0.923564
647	11			88	0.923564
650			88	11	0.923564
653			44	55	1.0
654		55	44		1.0
662		44		55	1.0
679	55	44			1.0
682	55		33	11	1.0
700		44	55		1.0
715		44		55	1.0
724		37		62	1.0
727	25			75	1.0
730	62		37		1.0
766	90		10		0.90298
768			90	10	0.90298
775	11	88			0.923564
778	11			88	0.923564
780		33	66		1.0
781		77		22	0.999999
799	12		87		0.992554
801	14		85		0.993533
805		85		14	0.993533
808		14	14	71	0.984337
810		14	85		0.993533
835	85	14			0.993533
850	14		85		0.993533
853		14	85		0.993533
879		16	83		0.994512
891	20		80		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain