SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene11155

Length: 763 nt

Origin of reads: Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene11155 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	putative guanine nucleotide-exchange protein GEP2 [Oryza sativa Japonica Group] dbj\|BAD30105.1\| putative guanine nucleotide-exchange protein GEP2 [Oryza sativa Japonica Group]	-	-	89%
FL-Next	tr=Putative guanine nucleotide-exchange protein GEP2; Oryza sativa subsp. japonica (Rice).	-	-	89%
Blast2go	brefeldin a-inhibited guanine nucleotide-exchange protein 1-like	-	-	92%

Source	GOs	Term	Type	Identity
Blast2go	defense response to bacterium	GO:0042742	Biological Process	92%
Blast2go	regulation of ARF protein signal transduction	GO:0032012	Biological Process	92%
Blast2go	vesicle-mediated transport	GO:0016192	Biological Process	92%
Blast2go	growth	GO:0040007	Biological Process	92%
Blast2go	ARF guanyl-nucleotide exchange factor activity	GO:0005086	Molecular Function	92%
Blast2go	protein binding	GO:0005515	Molecular Function	92%
Blast2go	early endosome	GO:0005769	Cellular Component	92%
Blast2go	trans-Golgi network	GO:0005802	Cellular Component	92%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	SEC7-like	IPR000904	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Domain of unknown function DUF1981, SEC7 associated	IPR015403	-	-

Full-Lengther Next Prediction

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
415	88			11	0.923564
416			88	11	0.923564
648			87	12	0.992554
649	87		12		0.992554
650	87			12	0.992554
657	14		85		0.993533
658			14	85	0.993533
660			14	85	0.993533
662		14		85	0.993533
663	14			85	0.993533
664	85		14		0.993533
665		14		85	0.993533
668	14	85			0.993533
669			14	85	0.993533
674			14	85	0.993533
675	14	85			0.993533
677	85		14		0.993533
693		83	16		0.994512
694		83		16	0.994512
696	16	83			0.994512
697		16	83		0.994512
700		16		83	0.994512
701	83	16			0.994512
706		83		16	0.994512
712		83	16		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain