SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene11139

Length: 990 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene11139

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Protein FAM50A, putative n=2 Tax=fabids RepID=B9STC7_RICCO	-	-	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	99%
Blast2go	protein	-	-	91%

Source	GOs	Term	Type	Identity
Blast2go	regulation of circadian rhythm	GO:0042752	Biological Process	91%
Blast2go	response to blue light	GO:0009637	Biological Process	91%
Blast2go	regulation of photomorphogenesis	GO:0010099	Biological Process	91%
Blast2go	ethylene mediated signaling pathway	GO:0009873	Biological Process	91%
Blast2go	response to red light	GO:0010114	Biological Process	91%
Blast2go	nucleus	GO:0005634	Cellular Component	91%

Source	InterPros	Term	Type	e value	Identity
Sma3	XAP5 protein	IPR007005	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AAC8

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 224 - 336

Fln protein: RRIKGQPGYHLLMK*K*NR*ENASSDDGERKKHKLGQLGKDPTVETSFLPDREREAEEQAERERLRKKWLTEQEHIRNEPLEITYSYWDGAGHRRVIQVRKGDTIAEFLRAVQQQLAPEFREIRTTSVENLLYVKEDLIIPHQHSFYELITNKARGKSGPLFHFDVHEDIRTTADATIEKDESHAGKVVERHWYEKNKHIFPASRWEIYDPTKKWERYTIHGD*

Protein Length: 225

Fln nts: AGGAGGATAAAAGGACAACCCGGTTATCATTTGCTGATGAAATGAAAATGAAACAGATGAGAAAATGCAAGTTCTGATGATGGGGAGCGAAAGAAGCATAAACTTGGGCAGCTTGGTAAAGATCCAACGGTGGAGACAAGTTTCTTGCCTGACAGGGAGCGGGAAGCTGAGGAACAGGCTGAACGTGAACGGTTGAGGAAGAAGTGGCTGACTGAACAAGAGCATATTAGAAATGAACCATTGGAGATTACTTACAGTTACTGGGATGGGGCAGGTCATAGAAGAGTTATTCAGGTTCGCAAAGGAGACACAATAGCTGAATTTCTCCGTGCTGTTCAGCAGCAACTTGCACCTGAATTTAGAGAGATTCGGACAACTTCTGTAGAGAATCTACTCTATGTGAAGGAGGACCTCATCATTCCACATCAACATAGCTTCTATGAGCTAATTACAAATAAGGCAAGGGGCAAAAGTGGACCGCTTTTTCATTTTGATGTTCACGAAGACATTCGGACAACAGCTGATGCTACCATAGAGAAGGATGAGTCACATGCTGGAAAAGTTGTTGAACGACATTGGTATGAAAAGAACAAGCACATATTTCCGGCATCCAGATGGGAGATATATGATCCTACTAAGAAGTGGGAACGCTACACTATTCACGGGGATTAA___ATTTTATGGCACTGTTGCTGTATTTAAGATTAGTTAACTGTACAATCATCTATCAGCAGCTCGCTTGCCTTGAACTTGTTATCATTTGGTTTAGTTCAATATAGAACTTTTTATTTGATATTCTTGCATCAAACTTATGATATGCTTGCTGCTGAAGAGTTGTATGAGGAGATTCTCATGGCATCCTAATGAAAATGGATAAACTAAGCATTTTGCTTCTGGCCTTTATGTTGACTTGTTTTATTTAAATTTGATTCAATACATTTAGATACATAACATACGTAGCAAATGTTACTTTCACTACATTTAAAATCAATT

Fln Alignment:

Contig11139___ENASSDDGERKKHKLGQLGKDPTVETSFLPDXXXXXXXXXXXXXXXKKWLTEQEHIRNEPLEITYSYWDGAGHRRVIQVRKGDTIAEFLRAVQQQLAPEFREIRTTSVENLLYVKEDLIIPHQHSFYELITNKARGKSGPLFHFDVHEDIRTTADATIEKDESHAGKVVERHWYEKNKHIFPASRWEIYDPTKKWERYTIHGD
D5AAC8_______________ENASSDDGERKKHKLGQLGKDPTVETSFLPDREREAEEQAERERLRKKWMTEQEHIRNEPLEITYSYWDGAGHRRVIQARKGDTIAEFLRAVQQQLAPEFREIRTTSVENLLYVKEDLIIPHQHSFYELITNKARGKSGPLFHFDVHEDIRTTADATIEKDESHAGKVVERHWYEKNKHIFPASRWEIYDPTKKWERYTIHGD

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
452	14		85		0.993533
473	16	83			0.994512
578	66			33	0.997452
580	33		33	33	0.997753
582			33	66	1.0
583	33		66		0.997452
584		33	33	33	0.997753
585	33	33		33	0.997753
586	33			66	1.0
587			33	66	0.997452
588	33		66		0.997452
589	66		33		0.997452
590	66	33			0.997452
591	66			33	0.997452
592	33		66		1.0
593	33		33	33	0.997753
594	33	66			1.0
596	33	66			0.997452
597	33		33	33	0.997753
598	33	66			1.0
602	33	66			1.0
905	87		12		0.992554
968	25		75		0.996473
980	25			75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain