SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene11086

Length: 1158 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene11086 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	CC-NBS-LRR resistance-like protein n=5 Tax=Pinaceae RepID=Q1L6F3_PINLA	-	-	3.0e-31	34%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	38%
Blast2go	cc-nbs-lrr protein	-	-	1.28919e-43	61%

Source	GOs	Term	Type	e value	Identity
Blast2go	nucleotide binding	GO:0000166	Molecular Function	1.28919e-43	61%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKQ3

Fln msg: Overlapping hits, possible frame ERROR between 980 and 959, Distance to subject end: 540 aas, your sequence is shorter than subject: 312 - 813

Fln protein: MDSVSQSIIDKFFIVTRTILNSMVSNKSSCEELRQNLLLLKPSIDEIAKVSSESSPAAHRGHPFKDIQAQLQDGIHLVKKLERMSSFNLYRRYRYGKKTQKIEKNVNDFLRTLDLHNPDVDFKGFSEQSELIEEMGRLIMERVNVKMTNDSSSNSFMLHQMSTTQLFQSAIDGSHDTPMSEEFEQSTGSDNSRVPSMPNFVVGLNNIVNDVKQILFLEGVSIVGVEGMGGSGKTTLALALCNDPExxxxxxxxxVFITVARSPNVKALLEIMWDKIIGSRRPGFQSIEDAHNQLQKKLSSKGNLQLLVVLDT

Protein Length: 313

Fln nts: ATGGGGGACTGTCATTATATATTTTGAAAATTTGATACACTGTCATTACAGATGCTGAAAATTTGATCAGGCACAGCTTTTCAACGGTATCGGTTCTCGTCGATAACTATTTGATCACAATATCTGGTTGAATTGGGCAATTTCTTTTGTCTATCTACTTGAAATATAAGCATTCTTTGACATTCTCCAAAGTGATTGGTATCGATTTTTGCAGTGTAGTT_-_ATGGATTCTGTTTCTCAGTCGATCATCGACAAGTTCTTCATAGTAACCAGAACCATCCTGAATAGTATGGTTTCTAACAAATCTTCCTGCGAGGAACTCAGACAAAACCTTTTGCTCCTCAAGCCTAGCATTGATGAAATTGCCAAGGTATCTTCTGAATCAAGCCCCGCGGCTCACAGAGGCCACCCATTCAAAGACATTCAAGCGCAGCTGCAAGATGGCATTCACCTCGTCAAAAAATTAGAGCGTATGAGCAGCTTTAATTTATACAGAAGGTATCGCTATGGAAAGAAAACCCAAAAGATAGAAAAGAATGTCAACGATTTCTTGCGTACCCTTGATCTCCACAACCCAGATGTGGATTTCAAGGGTTTTAGCGAACAATCTGAACTTATTGAAGAAATGGGTCGGCTTATAATGGAGAGGGTTAATGTTAAGATGACTAATGATTCCAGCTCCAATTCTTTCATGCTTCATCAAATGAGCACAACTCAACTATTTCAGAGCGCCATTGATGGATCGCATGATACTCCAATGTCTGAAGAGTTTGAACAGTCCACTGGCAGTGACAACTCCCGAGTCCCGAGTATGCCAAACTTTGTAGTGGGTTTGAATAATATTGTCAATGATGTCAAACAGATCCTATTCCTGGAGGGAGTTAGTATCGTTGGGGTTGAAGGGATGGGTGGAAGCGGCAAAACTACCCTCGCATTAGCCCTCTGCAACGATCCGGAAxxxxxxxxxxxxxxxxxxxxxxxxxxxGTTTTCATAACTGTTGCACGCTCTCCAAATGTAAAGGCCCTTCTGGAGATTATGTGGGATAAAATAATTGGAAGTCGAAGGCCTGGTTTTCAGAGCATCGAGGATGCGCACAACCAACTGCAGAAGAAACTCAGTTCAAAAGGAAATTTACAGTTGTTGGTGGTTTTGGATACATT

Fln Alignment:

Contig11086___LLLLKPSIDEIAKVS-SESSPAAHRGHPFKDIQAQLQDGIHLVKKLERMSSFNLYRRYRYGKKTQKIEKNVNDFLRTLDLHNP----------------DVDFKGFSEQSELIEEMGRLIMERVNVKMTNDSSSNSFMLHQMSTTQLFQSAIDGSHDTPMSEEFEQSTGSDNSRVPSMPNFVVGLNNIVNDVKQILFLEGVSIVGVEGMGGSGKTTLALALCNDPEVxxxxxxxVVFITVARSPNVKALLEIMWDKIIGSRRPGFQSIEDAHNQLQ-----KKLSSKGNLQLLVVLD
B8LKQ3_______________LLELQPTIDEIVKIEISDSDPSFKVGGQFKDL---LKAGFEEVENIERTRRFDFIARYQDGRRILKFLKKLKNFI---ELHGPPSLILTKKLEADWRARDADLKGCFEH----------LVEIVNAGMTNNSVSNITMLQRFDT-------VDGTLEATAS----QQSISYTYQVPDIPNFVVDLYNRIDNVKQLLLQNDVNIVGVTGMGGSGKTTLASALCDDTQVxxxxxxxIIFITVSQSPNVKGLLDTMWLKIIDLPKPDFQSTEDAHNQLQKALTLKNLSSETYRPILVVLD

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
391	90		10		0.90298
418		80		20	0.999996
457		75		25	1.0
465			75	25	1.0
466	75			25	1.0
493	25			75	1.0
527	50	50			1.0
540		33		66	1.0
569		66		33	1.0
631	20			80	0.995493
632	20			80	0.995493
634	20			80	0.995493
635	80			20	0.995493
706	20			20	0.99255
707			80	20	0.995493
933	14		85		0.993533
939	85		14		0.993533
965	85	14			0.993533
1006		14		85	0.993533
1110	85	14			0.993533
1111		14		85	0.993533
1116	66	33			1.0
1117	66	33			1.0
1118		33		66	1.0
1119		33	66		1.0
1121		66		33	1.0
1126			25	75	0.996473
1127	75		25		0.996473
1133	25			75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain