SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene11018

Length: 735 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene11018 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	GTP-binding protein alpha subunit, gna, putative n=1 Tax=Ricinus communis RepID=B9T5D0_RICCO	-	-	1.0e-12	46%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	56%
Blast2go	gtp-binding protein alpha	-	-	2.0039e-14	63%

Source	GOs	Term	Type	e value	Identity
Blast2go	G-protein coupled receptor signaling pathway	GO:0007186	Biological Process	2.0039e-14	63%
Blast2go	guanyl nucleotide binding	GO:0019001	Molecular Function	2.0039e-14	63%
Blast2go	signal transducer activity	GO:0004871	Molecular Function	2.0039e-14	63%

Source	InterPros	Term	Type	e value	Identity
Sma3	Guanine nucleotide binding protein (G-protein), alpha subunit	IPR001019	-	0.0	-
Sma3	G protein alpha subunit, helical insertion	IPR011025	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
445			71	28	1.0
447	28	71			1.0
448			28	71	1.0
453	28		71		1.0
455		28	71		1.0
456	71	28			1.0
461	71		28		1.0
468	33			66	1.0
469		40	60		1.0
523	66	33			0.997452
524	66	33			0.997452
527			66	33	0.997452
590	25	75			0.996473
591	25	75			0.996473
594			75	25	0.996473
716	33			66	0.997452
717	33		66		0.997452
718	66	33			0.997452
719	33		66		0.997452
720	33			66	0.997452
721		33	66		0.997452
724	66			33	0.997452
726		66	33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain