SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene10861

Length: 992 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene10861

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam12819, Malectin_like, Carbohydrate-binding protein of the ER	-	-	3.0e-28	22%
FL-Next	sp=Receptor-like protein kinase THESEUS 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	46%
Blast2go	receptor-like protein kinase theseus 1-like	-	-	0.0	62%

Source	GOs	Term	Type	Identity
Blast2go	protein autophosphorylation	GO:0046777	Biological Process	62%
Blast2go	regulation of unidimensional cell growth	GO:0051510	Biological Process	62%
Blast2go	post-embryonic development	GO:0009791	Biological Process	62%
Blast2go	brassinosteroid mediated signaling pathway	GO:0009742	Biological Process	62%
Blast2go	protein kinase activity	GO:0004672	Molecular Function	62%
Blast2go	plasma membrane	GO:0005886	Cellular Component	62%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Isopenicillin N synthase, conserved site	IPR002057	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Peptidase S16, lon N-terminal	IPR003111	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: Q9LK35

Fln msg: Distance to subject end: 570 aas, your sequence is shorter than subject: 285 - 855

Fln protein: MAVSLHFDFFLILCISIAHSRAAFIPKDNYLIDCGATSAVNLADGRRFETEGDSSSFLKTSFGSEAITVTTSNASVPSAVYKTARVFTKRASYSFEIKQKGRHWVRLYLYPIPDKTHDLKSAVFSVTTDEFVLLHEFTFKGKQISYLFKEYLINVDSDTLPLTFSPANGSLAFINAIEVVSAPDGLMPGTAPSIQPLVGGYPLSGVALETVYRINMGGPKIDSGNDTLLRVWENDQKYLEIKTAAQNASTNPSFIKYNDVVSDVIAPNMVYATAQEMALRESSIA

Protein Length: 286

Fln nts: ATGGGGAGGTCAGGTAATAGCAAAACAATGGCAGATTTGAGGCTGGTTTTCCACCAGCTGCTAGCCAAGATCCTCTTCTAGTTACCTGCTACACCCTAGCCAATTTCCCACAGATCCCCATTGAACTACCAGAAGAA_-_ATGGCCGTATCACTACATTTTGATTTCTTCCTCATTCTCTGCATCTCCATTGCTCATTCCAGGGCTGCCTTCATACCTAAAGACAACTACTTAATCGACTGCGGAGCAACAAGTGCTGTTAATCTGGCCGATGGTCGCAGGTTCGAGACTGAAGGAGACTCATCATCCTTTCTAAAGACCTCGTTCGGTAGCGAGGCGATTACAGTGACCACATCCAATGCTTCGGTCCCATCTGCGGTCTACAAAACCGCGCGGGTATTCACCAAACGAGCTTCCTACAGCTTCGAAATCAAGCAGAAGGGCAGACACTGGGTACGCCTCTATCTTTATCCCATCCCTGATAAAACCCATGATCTCAAATCTGCAGTATTTTCTGTTACAACAGACGAGTTCGTTCTGCTCCATGAGTTCACTTTCAAAGGCAAACAAATTTCGTATTTGTTCAAGGAGTATTTGATCAATGTGGATTCGGATACATTGCCTCTCACCTTTTCTCCAGCAAATGGGTCTCTGGCATTTATTAATGCCATTGAGGTTGTCTCGGCCCCTGATGGGTTGATGCCAGGGACGGCTCCGTCTATTCAGCCTCTTGTGGGTGGCTATCCGCTCTCTGGCGTAGCTCTGGAGACAGTTTATAGGATTAATATGGGAGGTCCTAAGATCGATTCTGGGAATGATACTTTGTTGAGAGTTTGGGAGAATGATCAGAAGTATTTGGAGATAAAAACTGCTGCTCAGAATGCTTCTACTAATCCCAGCTTTATCAAATACAATGATGTCGTTAGTGACGTGATTGCTCCTAACATGGTCTATGCAACAGCACAGGAAATGGCTTTGAGAGAATCCAGTATTGCA

Fln Alignment:

Contig10861___FLILCISIAHSRAAFIPKDNYLIDCGATSAVNLADGRRFETEGDSSSFLKTSFGSEAITVTTSNASVPSAVYKTARVFTKRASYSFEIKQKGRHWVRLYLYPIPDKTHDLKSAVFSVTTDEFVLLHEFTFKGKQISYLFKEYLINVDSDTLPLTFSPANGSLAFINAIEVVSAPDGLMPGTAPSIQPLVGGYPLSGVALETVYRINMGGPKIDSGNDTLLRVWENDQKYLEIKTAAQNASTNPSFIKYNDVVSDVIAPNMVYATAQEM
Q9LK35_______________WFLSCYTTTTSSALFNPPDNYLISCGSSQNITFQN-RIFVPDSLHSSLVLKIGNSSVATSTTSNNSTNS-IYQTARVFSSLASYRFKITSLGRHWIRLHFSPINNSTWNLTSASITVVTEDFVLLNNFSFNNFNGSYIFKEYTVNVTSEFLTLSFIPSNNSVVFVNAIEVVSVPDNLIPDQALALNPSTPFSGLSLLAFETVYRLNMGGPLLTSQNDTLGRQWDNDAEYLHVNSSVLVVTANPSSIKYSPSVTQETAPNMVYATADTM

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
152	75	25			0.996473
185		50	50		1.0
195			11	88	0.923564
196		88	11		0.923564
197		88	11		0.923564
231	66	33			1.0
241	10		90		0.90298
263			90	10	0.90298
350	88		11		0.923564
353		88	11		0.923564
354	88			11	0.923564
355	88		11		0.923564
356	11			88	0.923564
357		11	88		0.923564
361		88	11		0.923564
363		11	88		0.923564
365		88	11		0.923564
366		88		11	0.923564
374	11		88		0.923564
476		14		85	0.993533
478	85			14	0.993533
480	85	14			0.993533
481	83		16		0.994512
482	83	16			0.994512
525	20		80		0.995493
544	80		20		0.995493
790			75	25	0.996473
824		25		75	0.996473
826	75	25			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain