SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene10575

Length: 544 nt

Origin of reads: Biogeco1 v2

UniGene Fasta

>sp_v2.0_unigene10575
AATCTGGCGATGGGGAATCCAATCAAAACTCCAAATCAAAACTCCAACTCCTTCCAATGGCGGACTTCAAAGATGGCAGCCGCTTCCTCAACTCGAGAGTTATCGTTACTAATGGAATACAGGATGGCGATATGGAGAAGAGAGTGTGGAATTTCAGGCCGAGCTCGCCCTGTATGAGGGAAATGGCAGGGATTCGAGGCATGCTGGCTTATCTGAGGTCTCACTTAGATCCTAAAGGAAAGAGCGTGATTCCTCTCGGTTATGCTGATCCTTCTCCATTTGAATGCTACAAAGTCTCGAAGGAAGCTGAAGATTCCCTTGTAGAGGCCATTAGAAGCGGCCACTACAATGGTTATGCTCCAGCAGTTGGCCTTCCAGAAGCGCGAAGGGCAGTGGCAGAGTATCTCTCTCCAGGGCTTCCTTACAAGCTAGGTGCAGATGATATCTACTTAACCTGTGGTTGTAGACAAGCTATGGATGTAACTGTTGCAGTCTTGGGTGGTAAAGATGCAAACATTTTGTTGCCGAGACCAGGGTATCCACT

Ace file of the UniGene sp_v2.0_unigene10575

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	tyrosine aminotransferase [Solenostemon scutellarioides]	-	-	5.0e-28	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	62%
Blast2go	aminotransferase family protein	-	-	0.0	70%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring nitrogenous groups, Transaminases (aminotransferases).	EC:2.6.1.-	-	0.0	70%

Source	KEGGs	Term	Type	Identity
Blast2go	Cysteine and methionine metabolism	00270		70%
Blast2go	Lysine biosynthesis	00300		70%
Blast2go	Lysine degradation	00310		70%
Blast2go	Arginine and proline metabolism	00330		70%
Blast2go	Phenylalanine metabolism	00360		70%
Blast2go	Tryptophan metabolism	00380		70%
Blast2go	Phosphonate and phosphinate metabolism	00440		70%
Blast2go	Selenocompound metabolism	00450		70%
Blast2go	Glucosinolate biosynthesis	00966		70%
Blast2go	Metabolic pathways	01100		70%
Blast2go	Biosynthesis of secondary metabolites	01110		70%
Blast2go	1-aminocyclopropane-1-carboxylate synthase.	EC:4.4.1.14	-	70%

Source	KEGGs	Term	Identity
Blast2go	Cysteine and methionine metabolism	00270	70%
Blast2go	Biosynthesis of plant hormones	01070	70%
Blast2go	Metabolic pathways	01100	70%
Blast2go	Biosynthesis of secondary metabolites	01110	70%

Source	GOs	Term	Type	Identity
Blast2go	1-aminocyclopropane-1-carboxylate biosynthetic process	GO:0042218	Biological Process	70%
Blast2go	pyridoxal phosphate binding	GO:0030170	Molecular Function	70%
Blast2go	transaminase activity	GO:0008483	Molecular Function	70%
Blast2go	1-aminocyclopropane-1-carboxylate synthase activity	GO:0016847	Molecular Function	70%

Source	InterPros	Term	Type	Identity
Sma3	1-aminocyclopropane-1-carboxylate synthase	IPR001176	-	-
Sma3	Aminotransferases, class-I, pyridoxal-phosphate-binding site	IPR004838	-	-
Sma3	Aminotransferase, class I/classII	IPR004839	-	-
Sma3	Tyrosine/nicotianamine aminotransferase	IPR005958	-	-
Sma3	Pyridoxal phosphate-dependent transferase, major region, subdomain 1	IPR015421	-	-
Sma3	Pyridoxal phosphate-dependent transferase, major region, subdomain 2	IPR015422	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLE0

Fln msg: Distance to subject end: 276 aas, your sequence is shorter than subject: 162 - 403

Fln protein: MADFKDGSRFLNSRVIVTNGIQDGDMEKRVWNFRPSSPCMREMAGIRGMLAYLRSHLDPKGKSVIPLGYADPSPFECYKVSKEAEDSLVEAIRSGHYNGYAPAVGLPEARRAVAEYLSPGLPYKLGADDIYLTCGCRQAMDVTVAVLGGKDANILLPRPGYP

Protein Length: 163

Fln nts: AATCTGGCGATGGGGAATCCAATCAAAACTCCAAATCAAAACTCCAACTCCTTCCA_-_ATGGCGGACTTCAAAGATGGCAGCCGCTTCCTCAACTCGAGAGTTATCGTTACTAATGGAATACAGGATGGCGATATGGAGAAGAGAGTGTGGAATTTCAGGCCGAGCTCGCCCTGTATGAGGGAAATGGCAGGGATTCGAGGCATGCTGGCTTATCTGAGGTCTCACTTAGATCCTAAAGGAAAGAGCGTGATTCCTCTCGGTTATGCTGATCCTTCTCCATTTGAATGCTACAAAGTCTCGAAGGAAGCTGAAGATTCCCTTGTAGAGGCCATTAGAAGCGGCCACTACAATGGTTATGCTCCAGCAGTTGGCCTTCCAGAAGCGCGAAGGGCAGTGGCAGAGTATCTCTCTCCAGGGCTTCCTTACAAGCTAGGTGCAGATGATATCTACTTAACCTGTGGTTGTAGACAAGCTATGGATGTAACTGTTGCAGTCTTGGGTGGTAAAGATGCAAACATTTTGTTGCCGAGACCAGGGTATCCACT

Fln Alignment:

Contig10575___CMREMAGIRGMLAYLRSHLDPKGKSVIPLGYADPSPFECYKVSKEAEDSLVEAIRSGHYNGYAPAVGLPEARRAVAEYLSPGLPYKLGADDIYLTCGCRQAMDVTVAVLGGKDANILLPRPGYP
B8LLE0_______________CSHNMLGIRGVLDYVMSHLNPDGKSKIPLGHGDPSAFECFRTSIHVEDALIEAIRTGKYNGYSPADGLPQSRRVVADYLSRGFPYKLSEDDVYLTCGCSQAIDLALSVLAREGANILLPRPGFP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain